Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DPR03_RS01160 | Genome accession | NZ_CP030754 |
| Coordinates | 243240..244469 (-) | Length | 409 a.a. |
| NCBI ID | WP_004810078.1 | Uniprot ID | - |
| Organism | Acinetobacter schindleri strain H3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 238240..249469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DPR03_RS01135 | - | 239606..239929 (+) | 324 | WP_004810087.1 | pyrimidine/purine nucleoside phosphorylase | - |
| DPR03_RS01140 | rlmB | 240082..240831 (+) | 750 | WP_004810085.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| DPR03_RS01145 | - | 240838..241761 (+) | 924 | WP_081405839.1 | DMT family transporter | - |
| DPR03_RS01150 | coaE | 241782..242378 (-) | 597 | WP_071319778.1 | dephospho-CoA kinase | - |
| DPR03_RS01155 | pilD | 242380..243240 (-) | 861 | WP_071319779.1 | prepilin peptidase | Machinery gene |
| DPR03_RS01160 | pilC | 243240..244469 (-) | 1230 | WP_004810078.1 | type II secretion system F family protein | Machinery gene |
| DPR03_RS01165 | pilB | 244501..246210 (-) | 1710 | WP_071319780.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DPR03_RS01170 | tpiA | 246493..247284 (+) | 792 | WP_071319781.1 | triose-phosphate isomerase | - |
| DPR03_RS01175 | secG | 247298..247627 (+) | 330 | WP_004810073.1 | preprotein translocase subunit SecG | - |
| DPR03_RS01205 | rimP | 248674..249198 (+) | 525 | WP_004810072.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44984.45 Da Isoelectric Point: 9.9331
>NTDB_id=301310 DPR03_RS01160 WP_004810078.1 243240..244469(-) (pilC) [Acinetobacter schindleri strain H3]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV
Nucleotide
Download Length: 1230 bp
>NTDB_id=301310 DPR03_RS01160 WP_004810078.1 243240..244469(-) (pilC) [Acinetobacter schindleri strain H3]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATTACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTGGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCAATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCACCTATCTT
CGGTGATCTGGTGTATAAGGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGATAATGCCGTTGATG
GTTTGACCTCCATGATGGAGCCATTGATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCGATTTTCCAGATGGGTTCCGTGGTTTAA
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATTACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTGGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCAATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCACCTATCTT
CGGTGATCTGGTGTATAAGGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGATAATGCCGTTGATG
GTTTGACCTCCATGATGGAGCCATTGATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCGATTTTCCAGATGGGTTCCGTGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
89.435 |
99.511 |
0.89 |
| pilC | Acinetobacter baylyi ADP1 |
82.555 |
99.511 |
0.822 |
| pilC | Pseudomonas stutzeri DSM 10701 |
62.217 |
97.066 |
0.604 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.02 |
97.311 |
0.526 |
| pilG | Neisseria gonorrhoeae MS11 |
46.985 |
97.311 |
0.457 |
| pilG | Neisseria meningitidis 44/76-A |
46.985 |
97.311 |
0.457 |
| pilC | Vibrio cholerae strain A1552 |
42.647 |
99.756 |
0.425 |
| pilC | Vibrio campbellii strain DS40M4 |
41.235 |
99.022 |
0.408 |