Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DPR03_RS01155 Genome accession   NZ_CP030754
Coordinates   242380..243240 (-) Length   286 a.a.
NCBI ID   WP_071319779.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 237380..248240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS01130 recN 237526..239187 (-) 1662 WP_048881744.1 DNA repair protein RecN -
  DPR03_RS01135 - 239606..239929 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  DPR03_RS01140 rlmB 240082..240831 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DPR03_RS01145 - 240838..241761 (+) 924 WP_081405839.1 DMT family transporter -
  DPR03_RS01150 coaE 241782..242378 (-) 597 WP_071319778.1 dephospho-CoA kinase -
  DPR03_RS01155 pilD 242380..243240 (-) 861 WP_071319779.1 prepilin peptidase Machinery gene
  DPR03_RS01160 pilC 243240..244469 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  DPR03_RS01165 pilB 244501..246210 (-) 1710 WP_071319780.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DPR03_RS01170 tpiA 246493..247284 (+) 792 WP_071319781.1 triose-phosphate isomerase -
  DPR03_RS01175 secG 247298..247627 (+) 330 WP_004810073.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31995.28 Da        Isoelectric Point: 8.0564

>NTDB_id=301309 DPR03_RS01155 WP_071319779.1 242380..243240(-) (pilD) [Acinetobacter schindleri strain H3]
MQDLILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMELEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHTP
IRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=301309 DPR03_RS01155 WP_071319779.1 242380..243240(-) (pilD) [Acinetobacter schindleri strain H3]
ATGCAAGATCTTATTTTATATTTCACTCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTATCGG
TAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACTGGAATGGCGTAACGACTGCCAGCTGTTTTTAC
ACCCTGATCAACCGATCATTGATGAAAGCAAGCTCACGTTAAGTAAACCTGCGTCGACCTGTCCAAAATGTCATACACCA
ATTCGCTGGTATCAAAATATTCCTGTGATCAGCTGGCTGGCTCTTCGCGGCAAATGCGCTAACTGTCAAAATCCAATTAG
TGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTTGGTCCTACAATACAAA
TGTTGTTCGGTCTGGTGCTGACTTATATTCTGATTGCACTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGATCGC
TATACCCTTCCACTTGCAGCTTTAGGCTTAGGGGTGAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTGGGG
TTACATCATTGGCTTTCTGTGTTTATGGATCGTGTACTACCTGTTCAAAATAGTAACTGGTAAAGAAGGCATGGGTTATG
GTGACTTTAAATTGCTGGCTGCTCTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAATTGTATTATTGTCATCACTC
GTCGGTGCAATCATTGGCATTATCCTGCTAAAAGTGCGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCCAT
TGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.404

99.65

0.811
  pilD Acinetobacter baumannii D1279779

81.053

99.65

0.808
  pilD Vibrio campbellii strain DS40M4

52.837

98.601

0.521
  pilD Vibrio cholerae strain A1552

54.887

93.007

0.51
  pilD Neisseria gonorrhoeae MS11

47.253

95.455

0.451

Multiple sequence alignment