Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SPH_RS09815 Genome accession   NC_010380
Coordinates   1865104..1866942 (-) Length   612 a.a.
NCBI ID   WP_000385064.1    Uniprot ID   B1I8A0
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1860104..1871942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS09795 (SPH_2005) amiF 1860602..1861528 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  SPH_RS09800 (SPH_2006) amiE 1861539..1862606 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  SPH_RS09805 (SPH_2007) amiD 1862615..1863541 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  SPH_RS09810 (SPH_2008) amiC 1863541..1865037 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  SPH_RS09815 (SPH_2009) amiA 1865104..1866942 (-) 1839 WP_000385064.1 peptide ABC transporter substrate-binding protein Regulator
  SPH_RS09820 (SPH_2010) - 1867771..1868964 (-) 1194 WP_000835622.1 O-antigen ligase -
  SPH_RS09825 (SPH_2011) gtfA 1869102..1870544 (-) 1443 WP_001122334.1 sucrose phosphorylase -
  SPH_RS09830 (SPH_2012) - 1870855..1871688 (-) 834 WP_000806561.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67729.01 Da        Isoelectric Point: 4.5835

>NTDB_id=30030 SPH_RS09815 WP_000385064.1 1865104..1866942(-) (amiA) [Streptococcus pneumoniae Hungary19A-6]
MDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAPAVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKH
AADKKSEAMYLAENSVKGLADYLSGTSTDFSTVGVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAK
PTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKV
AEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTSKTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVR
NLFVKPDFVSAGEKTFGDLVAAQLPAYGDEWKGVNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASK
NYISRIQSFKQSVETVLGVENVVVDIQQMTSDEFLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTK
TYLGFDNPNSPSVVQVGLKEYDKLVDEAARETSDLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQ
TGSKGSDVYFKYLKLQDKVVTKEEYEKAREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=30030 SPH_RS09815 WP_000385064.1 1865104..1866942(-) (amiA) [Streptococcus pneumoniae Hungary19A-6]
TTGGACTACCTGATTTCAAGTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAA
TTACGGTAATCTTGCTCCTGCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTA
AAGGGGTTAAATGGTTTACCTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACAC
GCAGCAGATAAAAAATCAGAAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTC
AACAGATTTTTCAACAGTTGGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCT
GGAACTCTAAGTTGACCTATTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAA
CCAACAGATCCGACATCCTTGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGT
AAAAAATGAGCAATATTGGGATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGG
AGTCGCTAGAGCGTAACTTCACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTT
GCAGAAGAATACAAGGACAATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCA
AAGTTACAACTATACCTCTAAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTC
AAGCCTTGAATTTTGCTCTTGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGT
AATTTATTTGTAAAACCAGACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTA
TGGTGATGAGTGGAAAGGTGTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTG
CGAAAGCTAAGAAAGCTTTAGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAA
AACTACATATCTCGTATTCAGTCTTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCA
ACAAATGACAAGTGATGAATTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCAGGAG
GAGTTTCATGGGGTCCAGACTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAA
ACATATTTAGGATTTGATAATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGA
AGCTGCCAGAGAGACAAGCGACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCAC
TCTTTATTCCTGCTATGGCTTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAA
ACAGGCTCTAAGGGGTCAGATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTGGTGACTAAGGAAGAGTATGAAAA
AGCTCGTGAAAAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(31-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1I8A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.974

100

0.68
  amiA3 Streptococcus thermophilus LMD-9

67.863

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.7

100

0.678

Multiple sequence alignment