Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DOM24_RS00540 Genome accession   NZ_CP030031
Coordinates   115906..117036 (-) Length   376 a.a.
NCBI ID   WP_106439152.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 110906..122036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS00510 (DOM24_00510) - 111007..111348 (-) 342 WP_106439148.1 RcnB family protein -
  DOM24_RS00515 (DOM24_00515) - 111543..112085 (-) 543 WP_005017263.1 glutathione peroxidase -
  DOM24_RS00520 (DOM24_00520) - 112212..112853 (-) 642 WP_111280107.1 viral A-type inclusion protein -
  DOM24_RS00525 (DOM24_00525) - 113069..113824 (-) 756 WP_106439150.1 helix-turn-helix transcriptional regulator -
  DOM24_RS00530 (DOM24_00530) - 113940..114833 (+) 894 WP_005017258.1 DMT family transporter -
  DOM24_RS00535 (DOM24_00535) - 115292..115861 (-) 570 WP_106439151.1 L-threonylcarbamoyladenylate synthase -
  DOM24_RS00540 (DOM24_00540) dprA 115906..117036 (-) 1131 WP_106439152.1 DNA-processing protein DprA Machinery gene
  DOM24_RS00545 (DOM24_00545) tsaP 117052..118200 (-) 1149 WP_034675548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DOM24_RS00550 (DOM24_00550) def 118325..118855 (+) 531 WP_005017251.1 peptide deformylase -
  DOM24_RS00555 (DOM24_00555) - 118948..119370 (+) 423 WP_111280109.1 DUF2946 family protein -
  DOM24_RS00560 (DOM24_00560) - 119436..121499 (+) 2064 WP_111280111.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41843.65 Da        Isoelectric Point: 6.5819

>NTDB_id=298553 DOM24_RS00540 WP_106439152.1 115906..117036(-) (dprA) [Acinetobacter radioresistens strain LH6]
MIAELSQLHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAALARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYTDKPPILFGQGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEQILQYGGTIVSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQLIEDLALPTQWHSQQQKISSVPEPAQVPEH
LFELYQQLDWVGLDLDQIALKLPLPTAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=298553 DOM24_RS00540 WP_106439152.1 115906..117036(-) (dprA) [Acinetobacter radioresistens strain LH6]
ATGATTGCCGAATTATCGCAGCTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
CCAGCTGGTTGAGTATTTTGGCAGTGCTGAACAGGCAACCACTCCGGCAGCATTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAGCAACTGACCCAACGGGTA
CTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATACAGATAAGCCTCC
GATCCTGTTTGGCCAAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGACTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGACGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGCACTATTGCTGTAGTCGGAACCGGACTGGATCTGGTCTA
TCCAGCCCATAACCGTAAGCTTCAAGAACAGATACTTCAATACGGCGGTACAATTGTCAGTGAGTTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTTAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTAATTACTGCACAGCGTGCGGCCGATCAGGGCAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCGCCATACTGGTAGATCATCCGGAACAGCTAATTGAAG
ATCTGGCTTTACCGACCCAGTGGCACAGCCAGCAACAAAAGATAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAACAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGGATCTAGACCAGATTGCTCTTAAATTGCCATTACCTACGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)

DprA winged helix domain (DprA_WH)

(324-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.989

100

0.684
  dprA Acinetobacter baumannii D1279779

67.989

100

0.684
  dprA Acinetobacter baylyi ADP1

66.053

100

0.668
  dprA Neisseria meningitidis strain C311

37.783

100

0.399
  dprA Neisseria meningitidis MC58

37.783

100

0.399
  dprA Neisseria gonorrhoeae MS11

36.951

100

0.38
  dprA Neisseria gonorrhoeae strain FA1090

36.693

100

0.378
  dprA Vibrio cholerae strain A1552

43.354

84.043

0.364

Multiple sequence alignment