Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ES963_RS06310 Genome accession   NZ_CP035390
Coordinates   1212037..1212954 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM103641     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207037..1217954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS06295 (ES963_06295) trpS 1207618..1208610 (-) 993 WP_046160356.1 tryptophan--tRNA ligase -
  ES963_RS06300 (ES963_06300) oppA 1209354..1210991 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ES963_RS06305 (ES963_06305) oppB 1211098..1212033 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  ES963_RS06310 (ES963_06310) amiD 1212037..1212954 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ES963_RS06315 (ES963_06315) oppD 1212959..1214035 (+) 1077 WP_087614502.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ES963_RS06320 (ES963_06320) oppF 1214037..1214954 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ES963_RS06325 (ES963_06325) yjbB 1215061..1216278 (+) 1218 WP_087614503.1 MFS transporter -
  ES963_RS06330 (ES963_06330) yjbC 1216442..1217020 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ES963_RS06335 (ES963_06335) spx 1217201..1217596 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=298554 ES963_RS06310 WP_003232954.1 1212037..1212954(+) (amiD) [Bacillus subtilis strain SRCM103641]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=298554 ES963_RS06310 WP_003232954.1 1212037..1212954(+) (amiD) [Bacillus subtilis strain SRCM103641]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment