Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   DOM24_RS00545 Genome accession   NZ_CP030031
Coordinates   117052..118200 (-) Length   382 a.a.
NCBI ID   WP_034675548.1    Uniprot ID   A0A062BSM5
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112052..123200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS00520 (DOM24_00520) - 112212..112853 (-) 642 WP_111280107.1 viral A-type inclusion protein -
  DOM24_RS00525 (DOM24_00525) - 113069..113824 (-) 756 WP_106439150.1 helix-turn-helix transcriptional regulator -
  DOM24_RS00530 (DOM24_00530) - 113940..114833 (+) 894 WP_005017258.1 DMT family transporter -
  DOM24_RS00535 (DOM24_00535) - 115292..115861 (-) 570 WP_106439151.1 L-threonylcarbamoyladenylate synthase -
  DOM24_RS00540 (DOM24_00540) dprA 115906..117036 (-) 1131 WP_106439152.1 DNA-processing protein DprA Machinery gene
  DOM24_RS00545 (DOM24_00545) tsaP 117052..118200 (-) 1149 WP_034675548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DOM24_RS00550 (DOM24_00550) def 118325..118855 (+) 531 WP_005017251.1 peptide deformylase -
  DOM24_RS00555 (DOM24_00555) - 118948..119370 (+) 423 WP_111280109.1 DUF2946 family protein -
  DOM24_RS00560 (DOM24_00560) - 119436..121499 (+) 2064 WP_111280111.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42079.31 Da        Isoelectric Point: 9.4267

>NTDB_id=298554 DOM24_RS00545 WP_034675548.1 117052..118200(-) (tsaP) [Acinetobacter radioresistens strain LH6]
MKKVFKGSALRALGFKKQFIALAICSSLGIIMPGMAEAASRNINPPSLKASAPNVYVVKRGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGIIRRYGGQTSMQPQVRVESLNNAIPVIPLEHIRVWLERT
LIMSPDSVVNTPYILGTADNRVLAAAGQTVYARGNGLQVGQRYAVYREGEPYIFTDANGKSYNAGVELLQVASGVAVQNE
QDITTLELTQSYNGEVRRGDRVMPEYDPMLPTLFYPTIDHQVTEGGQVIRVMGSIGTAARHSVVTVNRGNIHGVQSGQVF
SVYQQGEVVRDPKTREQIKLPSQKVGNIMIFRTFDQLSYAYVLDSALPIKVGSGIQAPPMAE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=298554 DOM24_RS00545 WP_034675548.1 117052..118200(-) (tsaP) [Acinetobacter radioresistens strain LH6]
ATGAAAAAAGTTTTCAAAGGCAGCGCACTTCGTGCCTTGGGGTTTAAAAAGCAGTTTATTGCTCTCGCAATCTGTTCAAG
TTTGGGAATAATCATGCCTGGCATGGCTGAAGCAGCCAGCCGTAATATAAATCCGCCCTCTTTAAAAGCCAGTGCTCCTA
ATGTTTATGTGGTCAAAAGAGGGGATACTTTATGGGATATCGCCGGAAAATTCTTGAGTAAGCCGTGGCGCTGGCCAGAA
ATCTGGGCCAGCAACAAACATGTCAAGAATCCACACTGGATTTATCCGGGCGACCGTTTATTGCTGTGTACTCTAGACGG
ACGACCGCTGATCGGTAAAGATGAAGGTGACGGCTGTGAAGGTATTATTCGCCGTTATGGTGGCCAGACCAGTATGCAGC
CACAAGTTCGTGTTGAATCCCTAAATAATGCTATTCCAGTTATTCCGCTTGAACATATTCGGGTCTGGCTGGAACGCACC
CTGATAATGTCACCAGATTCAGTGGTCAATACCCCCTATATTTTAGGCACGGCTGATAACCGGGTATTGGCTGCTGCCGG
CCAAACCGTTTATGCACGCGGTAATGGCCTGCAAGTTGGTCAGCGTTATGCAGTTTATCGTGAGGGTGAGCCTTACATAT
TCACCGATGCTAATGGCAAGTCATATAATGCCGGTGTAGAGCTGCTTCAGGTGGCTTCCGGCGTAGCTGTGCAGAATGAA
CAGGATATTACTACGCTAGAATTAACGCAAAGTTATAATGGGGAAGTCCGTCGCGGTGATCGGGTCATGCCAGAATATGA
TCCTATGTTACCTACCCTGTTCTATCCAACAATTGACCATCAGGTGACTGAAGGCGGTCAGGTGATTCGGGTGATGGGAT
CAATCGGTACGGCAGCCAGACACAGTGTGGTAACTGTTAACCGGGGCAATATTCATGGTGTTCAGTCCGGTCAGGTATTC
AGTGTCTATCAGCAGGGTGAAGTTGTACGTGATCCGAAAACCCGCGAACAAATCAAACTGCCAAGTCAAAAAGTTGGTAA
TATTATGATTTTCCGTACTTTTGACCAGTTGAGCTATGCTTATGTACTGGACAGCGCCCTACCTATCAAAGTAGGTTCCG
GCATCCAGGCGCCGCCAATGGCAGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BSM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.789

99.476

0.704

Multiple sequence alignment