Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DM558_RS02335 Genome accession   NZ_CP029822
Coordinates   474691..475899 (-) Length   402 a.a.
NCBI ID   WP_127161876.1    Uniprot ID   A0A3S9XBK7
Organism   Entomomonas moraniae strain QZS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469691..480899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM558_RS02310 (DM558_02320) rpsO 470346..470615 (+) 270 WP_109703238.1 30S ribosomal protein S15 -
  DM558_RS02315 (DM558_02325) pnp 470756..472891 (+) 2136 WP_127161872.1 polyribonucleotide nucleotidyltransferase -
  DM558_RS02320 (DM558_02330) yacG 472943..473161 (-) 219 WP_127161873.1 DNA gyrase inhibitor YacG -
  DM558_RS02325 (DM558_02335) coaE 473154..473768 (-) 615 WP_127161874.1 dephospho-CoA kinase -
  DM558_RS02330 (DM558_02340) - 473820..474686 (-) 867 WP_127161875.1 A24 family peptidase -
  DM558_RS02335 (DM558_02345) pilC 474691..475899 (-) 1209 WP_127161876.1 type II secretion system F family protein Machinery gene
  DM558_RS02340 (DM558_02350) pilB 476052..477719 (-) 1668 WP_127161877.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DM558_RS02345 (DM558_02355) - 477896..479413 (-) 1518 WP_127161878.1 fumarate hydratase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43579.49 Da        Isoelectric Point: 10.0122

>NTDB_id=296196 DM558_RS02335 WP_127161876.1 474691..475899(-) (pilC) [Entomomonas moraniae strain QZS01]
MAQAAKTRTYLWKGVDKSGAKLKGELNATDPTVIKAILRKQGITAKQISRKLELGIGGKIKPLDIAIITRQLATMIKAGV
PMIQALEIIAEGAEKPKIRELLDNIKIEVASGNSFTSALRKRPLYFDELYCSLIESGEKSGTLETLLDRVAGYKEKSESL
KKKIKKAMIYPIAILVVAAIVSAILLVKVVPQFAQVFTSFGADLPWLTQQVVDASEYLQSDGWKVIIAIIVIGFAFKETY
KRSMSFRNIVDRGLLRVPVIGAVIHNSSIARFTRTLSTTFAAGVPLVEALESVAGATGNIVYKNAVLKIKQDVSTGRQLN
FAMRSSGVFPSLAIQLTAIGEESGSLDGMLGKAADFYEEVVDTIVDSLSALMEPVIMVVLGVIIGTLIIAMYLPIFQMGQ
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=296196 DM558_RS02335 WP_127161876.1 474691..475899(-) (pilC) [Entomomonas moraniae strain QZS01]
ATGGCACAAGCAGCAAAAACGCGTACTTATTTGTGGAAAGGTGTCGATAAGTCAGGCGCAAAACTTAAGGGTGAGCTTAA
TGCAACAGACCCTACGGTTATTAAGGCAATCCTTCGTAAACAAGGTATTACCGCAAAACAAATTAGCCGTAAGCTAGAGC
TAGGTATTGGTGGTAAAATAAAACCTCTCGATATTGCTATTATTACCCGCCAGCTTGCCACTATGATTAAAGCAGGTGTC
CCTATGATTCAAGCATTAGAAATTATTGCTGAAGGGGCAGAAAAGCCAAAAATAAGGGAACTGTTAGATAATATTAAGAT
AGAGGTTGCTTCAGGTAATAGTTTTACTTCAGCATTAAGGAAACGGCCACTTTATTTTGACGAACTATATTGTAGTTTGA
TTGAGTCAGGGGAAAAATCAGGTACGTTAGAAACCTTATTAGATCGTGTTGCAGGCTATAAAGAAAAAAGCGAGTCTCTA
AAGAAAAAAATCAAAAAGGCCATGATCTATCCTATTGCTATTCTTGTAGTAGCGGCTATTGTGTCAGCTATTCTATTAGT
CAAGGTCGTTCCTCAGTTTGCTCAAGTTTTTACCAGTTTTGGTGCTGATCTACCATGGTTAACTCAACAAGTAGTGGATG
CTTCTGAATACCTTCAATCGGATGGATGGAAAGTAATTATAGCTATCATCGTCATTGGGTTTGCTTTTAAAGAAACTTAT
AAACGATCAATGTCATTTCGTAATATTGTTGATAGGGGGTTATTGCGTGTCCCTGTAATCGGCGCCGTCATCCATAACTC
TTCTATTGCTCGTTTCACACGTACGCTATCTACTACTTTTGCTGCTGGAGTTCCTTTAGTTGAAGCATTAGAATCAGTTG
CCGGTGCAACGGGTAATATTGTTTATAAAAATGCAGTACTAAAAATTAAACAAGATGTATCCACAGGTCGCCAACTTAAT
TTTGCAATGCGTAGTAGTGGTGTATTCCCCTCTCTGGCCATTCAGTTAACCGCTATTGGTGAAGAGTCAGGTTCTCTCGA
TGGGATGCTTGGAAAAGCAGCAGACTTCTATGAGGAAGTTGTTGATACCATCGTGGATAGCTTATCAGCATTAATGGAAC
CCGTTATCATGGTGGTATTAGGGGTTATTATTGGTACGCTTATTATTGCGATGTACTTACCTATCTTCCAAATGGGGCAA
GTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9XBK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.741

100

0.612
  pilC Acinetobacter baylyi ADP1

59.5

99.502

0.592
  pilC Acinetobacter baumannii D1279779

57.286

99.005

0.567
  pilC Legionella pneumophila strain ERS1305867

48.363

98.756

0.478
  pilG Neisseria gonorrhoeae MS11

43.75

99.502

0.435
  pilG Neisseria meningitidis 44/76-A

43.25

99.502

0.43
  pilC Vibrio campbellii strain DS40M4

40.299

100

0.403
  pilC Vibrio cholerae strain A1552

39.454

100

0.396
  pilC Thermus thermophilus HB27

37.313

100

0.373

Multiple sequence alignment