Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DACI_RS04170 | Genome accession | NC_010002 |
| Coordinates | 910585..911151 (-) | Length | 188 a.a. |
| NCBI ID | WP_012202749.1 | Uniprot ID | A0A080NKP3 |
| Organism | Delftia acidovorans SPH-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 905585..916151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DACI_RS04145 (Daci_0812) | paaC | 905737..906519 (+) | 783 | WP_012202744.1 | 1,2-phenylacetyl-CoA epoxidase subunit PaaC | - |
| DACI_RS04150 (Daci_0813) | paaD | 906519..907088 (+) | 570 | WP_012202745.1 | 1,2-phenylacetyl-CoA epoxidase subunit PaaD | - |
| DACI_RS04155 (Daci_0814) | paaE | 907085..908182 (+) | 1098 | WP_012202746.1 | 1,2-phenylacetyl-CoA epoxidase subunit PaaE | - |
| DACI_RS04160 (Daci_0815) | - | 908213..909667 (-) | 1455 | WP_012202747.1 | SulP family inorganic anion transporter | - |
| DACI_RS04165 (Daci_0816) | - | 910001..910498 (-) | 498 | WP_012202748.1 | hypothetical protein | - |
| DACI_RS04170 (Daci_0817) | ssb | 910585..911151 (-) | 567 | WP_012202749.1 | single-stranded DNA-binding protein | Machinery gene |
| DACI_RS04175 (Daci_0818) | - | 911312..912487 (-) | 1176 | WP_043780591.1 | MFS transporter | - |
| DACI_RS04180 (Daci_0819) | uvrA | 912751..915864 (+) | 3114 | WP_012202751.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20389.52 Da Isoelectric Point: 5.9554
>NTDB_id=29486 DACI_RS04170 WP_012202749.1 910585..911151(-) (ssb) [Delftia acidovorans SPH-1]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF
Nucleotide
Download Length: 567 bp
>NTDB_id=29486 DACI_RS04170 WP_012202749.1 910585..911151(-) (ssb) [Delftia acidovorans SPH-1]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGATCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCGCCCATGGCACCCCCGCCCCAGCGCGCAGCCTCGGGCTTTGACGATATGGATGACGACATTCC
GTTCTGA
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGATCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCGCCCATGGCACCCCCGCCCCAGCGCGCAGCCTCGGGCTTTGACGATATGGATGACGACATTCC
GTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.333 |
100 |
0.553 |
| ssb | Glaesserella parasuis strain SC1401 |
53.093 |
100 |
0.548 |
| ssb | Neisseria gonorrhoeae MS11 |
46.032 |
100 |
0.463 |
| ssb | Neisseria meningitidis MC58 |
44.974 |
100 |
0.452 |