Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SPEA_RS02220 Genome accession   NC_009901
Coordinates   503951..505219 (-) Length   422 a.a.
NCBI ID   WP_012153678.1    Uniprot ID   A8GZK3
Organism   Shewanella pealeana ATCC 700345     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498951..510219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPEA_RS02190 (Spea_0406) - 499518..500534 (-) 1017 WP_012153491.1 IS110-like element ISSpe2 family transposase -
  SPEA_RS02195 (Spea_0407) mutT 500954..501343 (-) 390 WP_012153673.1 8-oxo-dGTP diphosphatase MutT -
  SPEA_RS02200 (Spea_0408) yacG 501340..501579 (-) 240 WP_012153674.1 DNA gyrase inhibitor YacG -
  SPEA_RS02205 (Spea_0409) zapD 501639..502373 (-) 735 WP_012153675.1 cell division protein ZapD -
  SPEA_RS02210 (Spea_0410) coaE 502382..502987 (-) 606 WP_012153676.1 dephospho-CoA kinase -
  SPEA_RS02215 (Spea_0411) pilD 503007..503918 (-) 912 WP_012153677.1 A24 family peptidase Machinery gene
  SPEA_RS02220 (Spea_0412) pilC 503951..505219 (-) 1269 WP_012153678.1 type II secretion system F family protein Machinery gene
  SPEA_RS02225 (Spea_0413) pilB 505266..506972 (-) 1707 WP_012153679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SPEA_RS23470 (Spea_0414) - 507007..507453 (-) 447 WP_012153680.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SPEA_RS02235 (Spea_0415) nadC 508211..509095 (-) 885 WP_012153681.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SPEA_RS02240 (Spea_0416) ampD 509338..509880 (+) 543 WP_012153682.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45998.30 Da        Isoelectric Point: 10.3030

>NTDB_id=29350 SPEA_RS02220 WP_012153678.1 503951..505219(-) (pilC) [Shewanella pealeana ATCC 700345]
MATATIKPKKTRAKKTKNQSKVLTFEWKGTNRDGTKTSGELRGVSSAEIRAQLKSQGVNPKSVKKQSAPLFKLGDAKIKP
MDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGS
LDTVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPPFTQFVLKISRGLEHSW
YFFVLAIGLAIFAFKKAHLGSQHFRDQVDTFVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RKAIFKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
VVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=29350 SPEA_RS02220 WP_012153678.1 503951..505219(-) (pilC) [Shewanella pealeana ATCC 700345]
ATGGCGACGGCAACAATTAAACCTAAAAAGACTCGCGCCAAGAAAACGAAAAACCAATCAAAAGTCCTCACCTTCGAGTG
GAAAGGCACCAATCGAGATGGCACAAAAACTTCTGGTGAACTCAGGGGCGTCTCTAGCGCAGAAATACGCGCTCAATTAA
AGAGCCAAGGGGTAAACCCTAAGTCAGTAAAAAAACAATCTGCTCCCCTGTTTAAACTAGGGGACGCCAAAATTAAACCC
ATGGATATAGCCATGGTCACTCGTCAGATAGCGACCATGCTTGCGGCAGGCGTGCCTCTAGTCACCACAATAGAGCTGCT
TGGCCGTGGTCATGAAAAAGCCAAGATGCGAGAACTGTTAGCAACTATTCTTGCCGAGATTCAATCTGGTATTCCATTAT
CTGATGCGCTCAGACCTCACAGACAATATTTCGATGATCTCTATGTGGATCTTGTTGCAGCAGGCGAACACTCAGGATCC
CTCGATACCGTATTTGATCGTATAGCGACCTATAGAGAAAAATCAGAAGCTCTAAAGTCGAAAATTAAGAAGGCGATGTT
CTACCCAGCAGCCGTTGTTATCGTTGCTATCTTGGTTACCTCTCTTTTATTACTGTTCGTCGTGCCGCAGTTTGAAGAGA
TTTTTAAAGGCTTTGGCGCTGAGCTTCCACCTTTTACCCAATTCGTATTGAAAATTTCAAGGGGGCTTGAACACTCTTGG
TATTTTTTTGTACTTGCTATTGGTCTAGCTATCTTTGCCTTTAAGAAAGCGCATCTAGGCTCGCAACACTTTAGAGATCA
GGTTGACACCTTTGTTTTAAAAATCCCCGCCATTGGCCCCATTCTGCATAAAGGTGCCATGGCCCGCTTCGCTCGCACAT
TAGCAACTACCTTTGCCGCTGGTGTTCCCTTAATCGATGGCCTAGAGTCCGCAGCGGGCGCATCGGGTAACGCAGTGTAT
CGTAAGGCCATATTTAAAATCCGCACCGAAGTGATGTCGGGAATGCAGATGAATGTAGCCATGCGCACCACGGGACTGTT
TCCCGATATGCTGATCCAGATGGTGATGATCGGCGAAGAGTCGGGCTCACTCGATAATATGCTCAATAAAGTGGCAAACA
TTTATGAGATGCAGGTGGATGATGCCGTAGATGGCTTATCAAGTCTGATAGAACCGATTATGATGGTGGTTATCGGCACC
GTGGTTGGTGGTCTAATTGTCGCCATGTACTTACCCATCTTCCAGATGGGTAAAGTTGTAGGCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8GZK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

93.839

0.528
  pilC Acinetobacter baylyi ADP1

50.122

96.919

0.486
  pilC Legionella pneumophila strain ERS1305867

49.505

95.735

0.474
  pilC Acinetobacter baumannii D1279779

50

94.313

0.472
  pilC Vibrio cholerae strain A1552

48.995

94.313

0.462
  pilC Vibrio campbellii strain DS40M4

44.903

97.63

0.438
  pilG Neisseria gonorrhoeae MS11

42.537

95.261

0.405
  pilG Neisseria meningitidis 44/76-A

42.04

95.261

0.4

Multiple sequence alignment