Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DK842_RS04300 Genome accession   NZ_CP029495
Coordinates   861873..863096 (-) Length   407 a.a.
NCBI ID   WP_114060250.1    Uniprot ID   A0A344UH12
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856873..868096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS04270 (DK842_04270) tsaE 857601..858095 (+) 495 WP_114060247.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DK842_RS04275 (DK842_04275) - 858053..859294 (+) 1242 WP_114060248.1 N-acetylmuramoyl-L-alanine amidase -
  DK842_RS04280 (DK842_04280) yacG 859363..859554 (-) 192 WP_114063600.1 DNA gyrase inhibitor YacG -
  DK842_RS04285 (DK842_04285) zapD 859560..860318 (-) 759 WP_168191805.1 cell division protein ZapD -
  DK842_RS04290 (DK842_04290) coaE 860355..861001 (-) 647 Protein_837 dephospho-CoA kinase -
  DK842_RS04295 (DK842_04295) pilD 860953..861873 (-) 921 WP_114060249.1 A24 family peptidase Machinery gene
  DK842_RS04300 (DK842_04300) pilC 861873..863096 (-) 1224 WP_114060250.1 type II secretion system F family protein Machinery gene
  DK842_RS04305 (DK842_04305) pilF 863136..864842 (-) 1707 WP_114060251.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DK842_RS04310 (DK842_04310) - 865011..866135 (-) 1125 WP_114060252.1 porin -
  DK842_RS04315 (DK842_04315) comE 866532..866852 (-) 321 WP_114060253.1 helix-hairpin-helix domain-containing protein Machinery gene
  DK842_RS04320 (DK842_04320) - 866907..867728 (-) 822 WP_114060254.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44910.64 Da        Isoelectric Point: 9.9849

>NTDB_id=293291 DK842_RS04300 WP_114060250.1 861873..863096(-) (pilC) [Chromobacterium phragmitis strain IIBBL 112-1]
MATTAAKKTNPGYIWEWEGKDKSGKMIRGELRAESEAVAKTQLRRQGINVAKIRRRRSGFGKKITERDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHGNPAVTRMLLEVRADVETGSSLAEAFRKKPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHYWWLIFGTLFGAIFAF
FYAFKRTPRMQEQMDRILLRVPVVGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQADVNTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=293291 DK842_RS04300 WP_114060250.1 861873..863096(-) (pilC) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGGCGACCACGGCGGCCAAGAAGACGAATCCAGGCTACATCTGGGAATGGGAGGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAGTTGCGGGCCGAGTCGGAAGCCGTCGCCAAGACCCAGTTGCGCCGGCAAGGCATCAACGTGGCCAAGATCC
GCCGCCGGCGCAGCGGCTTCGGCAAGAAGATCACCGAGAGGGACATCACGCTGTTCACCCGCCAGCTGTCGACGATGATG
CGCGCCGGCGTGCCCTTGCTGCAGGCATTCGACATCGCGGCCAAGGGCCACGGCAATCCTGCCGTGACTCGGATGTTGCT
GGAGGTGAGGGCGGACGTGGAAACGGGCTCTTCGCTGGCCGAGGCTTTCCGCAAGAAGCCATTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCCGCCGGCGAGGCGGGCGGCGTGCTGGATACCTTGCTGGACAAGCTGGCCACCTACAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAGTCGGCGCTGATTTACCCCTCCGCCATCGTCGGCACGGCTTTCATCATCACCGC
GGTGATCATGATCTACGTAATCCCGGCATTCAAAGACTTATTCTCCAGTTTCGGCGCCAATCTGCCGGCGCCTACGCTGT
TCGTGATCTGGCTGTCGGACCAATTCGTGCATTACTGGTGGCTGATTTTCGGAACCCTCTTCGGCGCGATCTTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAGGATGCAGGAGCAGATGGATCGCATTCTGCTGCGGGTGCCGGTGGTGGGCGACAT
CATCAGAAAAGCCACCATCGCGCGCTGGGCGCGGACCTTGTCCACGCTGTTCTCCGCCGGCGTGCCGCTGGTGGAGGCGT
TGGACTCGGTCGGCGGGGCTGCCGGCAATCAGGTATACGCCGAGGCGACCCGGCGGATCCAGGCGGATGTCAATACCGGC
TCCAGCCTTAATTATTCGATGCAGCGCACCGACCTGTTTCCCAATATGGTGCTGCAGATGACCTCCATCGGCGAGGAGTC
CGGTTCGCTGGACCAGATGCTGGACAAAGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTAGCCGCGCTTTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGATATTGATAGGCGGGCTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGTCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344UH12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.218

99.263

0.528
  pilC Pseudomonas stutzeri DSM 10701

52.97

99.263

0.526
  pilG Neisseria gonorrhoeae MS11

54.22

96.069

0.521
  pilG Neisseria meningitidis 44/76-A

54.22

96.069

0.521
  pilC Acinetobacter baylyi ADP1

50.614

100

0.506
  pilC Acinetobacter baumannii D1279779

48.894

100

0.489
  pilC Vibrio campbellii strain DS40M4

38.221

100

0.391
  pilC Vibrio cholerae strain A1552

36.855

100

0.369

Multiple sequence alignment