Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DK842_RS04295 | Genome accession | NZ_CP029495 |
| Coordinates | 860953..861873 (-) | Length | 306 a.a. |
| NCBI ID | WP_114060249.1 | Uniprot ID | A0A344UH11 |
| Organism | Chromobacterium phragmitis strain IIBBL 112-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 855953..866873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK842_RS04260 (DK842_04260) | - | 856106..856522 (+) | 417 | WP_114060245.1 | MaoC family dehydratase | - |
| DK842_RS04265 (DK842_04265) | queG | 856526..857563 (-) | 1038 | WP_332835401.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| DK842_RS04270 (DK842_04270) | tsaE | 857601..858095 (+) | 495 | WP_114060247.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| DK842_RS04275 (DK842_04275) | - | 858053..859294 (+) | 1242 | WP_114060248.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DK842_RS04280 (DK842_04280) | yacG | 859363..859554 (-) | 192 | WP_114063600.1 | DNA gyrase inhibitor YacG | - |
| DK842_RS04285 (DK842_04285) | zapD | 859560..860318 (-) | 759 | WP_168191805.1 | cell division protein ZapD | - |
| DK842_RS04290 (DK842_04290) | coaE | 860355..861001 (-) | 647 | Protein_837 | dephospho-CoA kinase | - |
| DK842_RS04295 (DK842_04295) | pilD | 860953..861873 (-) | 921 | WP_114060249.1 | A24 family peptidase | Machinery gene |
| DK842_RS04300 (DK842_04300) | pilC | 861873..863096 (-) | 1224 | WP_114060250.1 | type II secretion system F family protein | Machinery gene |
| DK842_RS04305 (DK842_04305) | pilF | 863136..864842 (-) | 1707 | WP_114060251.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DK842_RS04310 (DK842_04310) | - | 865011..866135 (-) | 1125 | WP_114060252.1 | porin | - |
| DK842_RS04315 (DK842_04315) | comE | 866532..866852 (-) | 321 | WP_114060253.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 306 a.a. Molecular weight: 33204.31 Da Isoelectric Point: 7.5465
>NTDB_id=293290 DK842_RS04295 WP_114060249.1 860953..861873(-) (pilD) [Chromobacterium phragmitis strain IIBBL 112-1]
MLDDIGWLLATHPAWLVGVAVVFGLLVGSFLNVVICRLPRMEEREFLADSVEYLAEGGGSSSLRLAALQARQEMGEEAEY
NLWRPASHCPACRTPVAPWRNVPLLSFLLLRGKCGSCGAAISWRYPLVESLCGLLFGFLAWKLGWGWPLAGALLLTAFLL
ALAFIDLDTKLLPDRLTLPLLWGGLLFNLQTGQVPLASAVLGAVYGYMTLWLVSNAYKLVAGRHGMGGGDFKLLAALGAW
LGWTMLPLIVLLSSFVGAVCGIVMLSLSRIGRGQEIPFGPYLTAAGWIALVWGEQIVNGYLSWLSR
MLDDIGWLLATHPAWLVGVAVVFGLLVGSFLNVVICRLPRMEEREFLADSVEYLAEGGGSSSLRLAALQARQEMGEEAEY
NLWRPASHCPACRTPVAPWRNVPLLSFLLLRGKCGSCGAAISWRYPLVESLCGLLFGFLAWKLGWGWPLAGALLLTAFLL
ALAFIDLDTKLLPDRLTLPLLWGGLLFNLQTGQVPLASAVLGAVYGYMTLWLVSNAYKLVAGRHGMGGGDFKLLAALGAW
LGWTMLPLIVLLSSFVGAVCGIVMLSLSRIGRGQEIPFGPYLTAAGWIALVWGEQIVNGYLSWLSR
Nucleotide
Download Length: 921 bp
>NTDB_id=293290 DK842_RS04295 WP_114060249.1 860953..861873(-) (pilD) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGCTGGACGATATCGGATGGCTGCTGGCCACGCACCCGGCTTGGCTGGTCGGCGTGGCGGTGGTGTTTGGATTGCTGGT
AGGCAGTTTTCTCAATGTGGTGATTTGCCGCTTGCCCAGAATGGAGGAGCGGGAGTTTTTGGCCGATAGCGTGGAATATT
TGGCCGAGGGGGGCGGATCCTCCTCGCTGCGGCTGGCTGCGCTGCAGGCCCGGCAGGAAATGGGAGAGGAGGCCGAATAC
AATTTGTGGCGCCCCGCCTCGCATTGTCCGGCTTGCCGGACGCCGGTGGCTCCTTGGCGCAATGTGCCGCTGCTGAGCTT
CCTGCTGCTGCGCGGGAAGTGCGGGTCTTGCGGCGCGGCCATCTCCTGGCGCTATCCATTGGTGGAGTCGCTGTGCGGAC
TGCTGTTCGGTTTCCTGGCTTGGAAGCTGGGCTGGGGCTGGCCACTGGCCGGCGCGCTGTTGTTGACGGCTTTTCTGCTG
GCGTTGGCCTTCATCGATCTCGACACAAAACTGTTGCCGGACCGACTGACGTTGCCCTTGCTATGGGGCGGGCTGCTGTT
CAATTTGCAGACGGGGCAGGTGCCGCTGGCGTCCGCCGTGCTTGGCGCGGTTTATGGCTATATGACGCTATGGCTGGTGT
CGAATGCGTACAAGCTGGTGGCTGGGCGACATGGAATGGGCGGCGGCGACTTCAAGTTGTTGGCGGCGCTGGGGGCCTGG
CTTGGGTGGACAATGCTGCCATTGATCGTATTGTTGTCTTCGTTTGTCGGCGCGGTTTGCGGCATCGTCATGCTATCGCT
CTCGCGCATCGGCCGCGGGCAAGAAATACCGTTTGGCCCCTATCTGACCGCCGCGGGCTGGATCGCTCTGGTATGGGGCG
AGCAAATCGTGAATGGATATTTGTCATGGCTATCCCGGTAG
ATGCTGGACGATATCGGATGGCTGCTGGCCACGCACCCGGCTTGGCTGGTCGGCGTGGCGGTGGTGTTTGGATTGCTGGT
AGGCAGTTTTCTCAATGTGGTGATTTGCCGCTTGCCCAGAATGGAGGAGCGGGAGTTTTTGGCCGATAGCGTGGAATATT
TGGCCGAGGGGGGCGGATCCTCCTCGCTGCGGCTGGCTGCGCTGCAGGCCCGGCAGGAAATGGGAGAGGAGGCCGAATAC
AATTTGTGGCGCCCCGCCTCGCATTGTCCGGCTTGCCGGACGCCGGTGGCTCCTTGGCGCAATGTGCCGCTGCTGAGCTT
CCTGCTGCTGCGCGGGAAGTGCGGGTCTTGCGGCGCGGCCATCTCCTGGCGCTATCCATTGGTGGAGTCGCTGTGCGGAC
TGCTGTTCGGTTTCCTGGCTTGGAAGCTGGGCTGGGGCTGGCCACTGGCCGGCGCGCTGTTGTTGACGGCTTTTCTGCTG
GCGTTGGCCTTCATCGATCTCGACACAAAACTGTTGCCGGACCGACTGACGTTGCCCTTGCTATGGGGCGGGCTGCTGTT
CAATTTGCAGACGGGGCAGGTGCCGCTGGCGTCCGCCGTGCTTGGCGCGGTTTATGGCTATATGACGCTATGGCTGGTGT
CGAATGCGTACAAGCTGGTGGCTGGGCGACATGGAATGGGCGGCGGCGACTTCAAGTTGTTGGCGGCGCTGGGGGCCTGG
CTTGGGTGGACAATGCTGCCATTGATCGTATTGTTGTCTTCGTTTGTCGGCGCGGTTTGCGGCATCGTCATGCTATCGCT
CTCGCGCATCGGCCGCGGGCAAGAAATACCGTTTGGCCCCTATCTGACCGCCGCGGGCTGGATCGCTCTGGTATGGGGCG
AGCAAATCGTGAATGGATATTTGTCATGGCTATCCCGGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Neisseria gonorrhoeae MS11 |
50.69 |
94.771 |
0.48 |
| pilD | Vibrio cholerae strain A1552 |
47.586 |
94.771 |
0.451 |
| pilD | Vibrio campbellii strain DS40M4 |
45.548 |
95.425 |
0.435 |
| pilD | Acinetobacter nosocomialis M2 |
43.854 |
98.366 |
0.431 |
| pilD | Acinetobacter baumannii D1279779 |
43.189 |
98.366 |
0.425 |