Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DK842_RS04315 Genome accession   NZ_CP029495
Coordinates   866532..866852 (-) Length   106 a.a.
NCBI ID   WP_114060253.1    Uniprot ID   -
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861532..871852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS04300 (DK842_04300) pilC 861873..863096 (-) 1224 WP_114060250.1 type II secretion system F family protein Machinery gene
  DK842_RS04305 (DK842_04305) pilF 863136..864842 (-) 1707 WP_114060251.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DK842_RS04310 (DK842_04310) - 865011..866135 (-) 1125 WP_114060252.1 porin -
  DK842_RS04315 (DK842_04315) comE 866532..866852 (-) 321 WP_114060253.1 helix-hairpin-helix domain-containing protein Machinery gene
  DK842_RS04320 (DK842_04320) - 866907..867728 (-) 822 WP_114060254.1 inner membrane protein YpjD -
  DK842_RS04325 (DK842_04325) ffh 867840..869195 (+) 1356 WP_114060255.1 signal recognition particle protein -
  DK842_RS04330 (DK842_04330) purB 869373..870743 (+) 1371 WP_114063602.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 10763.76 Da        Isoelectric Point: 10.7594

>NTDB_id=293293 DK842_RS04315 WP_114060253.1 866532..866852(-) (comE) [Chromobacterium phragmitis strain IIBBL 112-1]
MKKLLAVFAGLLLLCNVALAAVNINTATPQQLEALKGIGPAKAKAIVDYRTKNGPFKTVDDLKKVSGIGDKTLDGLRKEI
SVSGASAAPAAKPATAKPAAAKPAAK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=293293 DK842_RS04315 WP_114060253.1 866532..866852(-) (comE) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGAAGAAGCTGTTAGCCGTTTTCGCCGGTTTGCTGTTGCTGTGCAATGTCGCCTTGGCCGCCGTCAACATCAACACCGC
CACGCCGCAGCAACTGGAAGCGCTGAAAGGCATCGGTCCGGCCAAGGCCAAGGCGATTGTCGACTACCGGACCAAGAACG
GTCCGTTCAAGACGGTGGATGACTTGAAGAAGGTTTCCGGCATTGGCGACAAAACCCTGGATGGCCTGCGCAAGGAAATC
AGCGTGAGCGGCGCCTCTGCCGCGCCGGCGGCGAAGCCCGCGACGGCAAAGCCAGCGGCCGCCAAGCCAGCCGCCAAGTA
G

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

54.839

87.736

0.481
  comE Neisseria gonorrhoeae MS11

54.839

87.736

0.481
  comE Neisseria gonorrhoeae MS11

54.839

87.736

0.481
  comE Neisseria gonorrhoeae MS11

54.839

87.736

0.481
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.602

78.302

0.396

Multiple sequence alignment