Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DF184_RS00370 Genome accession   NZ_CP029398
Coordinates   62768..63949 (+) Length   393 a.a.
NCBI ID   WP_109371015.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 57768..68949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS00355 (DF184_00355) mutL 59231..61168 (+) 1938 WP_029172056.1 DNA mismatch repair endonuclease MutL -
  DF184_RS00360 (DF184_00360) ruvA 61207..61797 (+) 591 WP_109371013.1 Holliday junction branch migration protein RuvA -
  DF184_RS00365 (DF184_00365) - 62162..62731 (+) 570 WP_024398416.1 DNA-3-methyladenine glycosylase I -
  DF184_RS00370 (DF184_00370) cinA 62768..63949 (+) 1182 WP_109371015.1 competence/damage-inducible protein A Machinery gene
  DF184_RS00375 (DF184_00375) recA 64001..65152 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DF184_RS00380 (DF184_00380) spx 65387..65785 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DF184_RS00385 (DF184_00385) - 65885..66151 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DF184_RS00390 (DF184_00390) ruvX 66151..66570 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DF184_RS00395 (DF184_00395) - 66582..66902 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  DF184_RS00400 (DF184_00400) - 67110..67688 (+) 579 WP_105118973.1 nucleotidyltransferase family protein -
  DF184_RS00405 (DF184_00405) comX/sigX 67762..68028 (+) 267 WP_024383069.1 hypothetical protein Regulator
  DF184_RS00410 (DF184_00410) rpsJ 68350..68658 (+) 309 WP_014735259.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43040.14 Da        Isoelectric Point: 4.3750

>NTDB_id=292249 DF184_RS00370 WP_109371015.1 62768..63949(+) (cinA) [Streptococcus suis strain HN105]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAV
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILKRDKLAEYFYAYGEDNSLVKMVASCLIEKKQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGWLSEEV
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLAMTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=292249 DF184_RS00370 WP_109371015.1 62768..63949(+) (cinA) [Streptococcus suis strain HN105]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGCCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
AAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCCGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGCTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGCCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGGGTGACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCGTG
TTTTCTGAGAGTCTCTTGCCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGCATTGG
TGAAAGCCAGCTGGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCACCCTATGCTAAGGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTGAAACGTGACAAACTGGCAGAGTATTTCTATGCCTACGGAGAGGATAATAGTTTGGTCAAAATGGTAGCGTCTTG
TTTGATAGAGAAAAAACAAACTATAGCCATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGTTTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGGAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCTGGCTATCAGAGGAAGTT
GACTGCATTCGTCAGGAGCTGCAAGCTGATTTGGGTCTGGCTGTGTCTGTGCTTATCAAGCCTGAGTCGACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTATGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

93.893

100

0.939
  cinA Streptococcus mutans UA159

56.448

100

0.59
  cinA Streptococcus mitis SK321

55.769

100

0.59
  cinA Streptococcus mitis NCTC 12261

55.529

100

0.588
  cinA Streptococcus pneumoniae TIGR4

55.529

100

0.588
  cinA Streptococcus pneumoniae Rx1

55.529

100

0.588
  cinA Streptococcus pneumoniae R6

55.529

100

0.588
  cinA Streptococcus pneumoniae D39

55.288

100

0.585
  cinA Bacillus subtilis subsp. subtilis str. 168

41.176

99.491

0.41

Multiple sequence alignment