Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DF184_RS00405 Genome accession   NZ_CP029398
Coordinates   67762..68028 (+) Length   88 a.a.
NCBI ID   WP_024383069.1    Uniprot ID   A0A0Z8IEV9
Organism   Streptococcus suis strain HN105     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 62762..73028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS00370 (DF184_00370) cinA 62768..63949 (+) 1182 WP_109371015.1 competence/damage-inducible protein A Machinery gene
  DF184_RS00375 (DF184_00375) recA 64001..65152 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DF184_RS00380 (DF184_00380) spx 65387..65785 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DF184_RS00385 (DF184_00385) - 65885..66151 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DF184_RS00390 (DF184_00390) ruvX 66151..66570 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DF184_RS00395 (DF184_00395) - 66582..66902 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  DF184_RS00400 (DF184_00400) - 67110..67688 (+) 579 WP_105118973.1 nucleotidyltransferase family protein -
  DF184_RS00405 (DF184_00405) comX/sigX 67762..68028 (+) 267 WP_024383069.1 hypothetical protein Regulator
  DF184_RS00410 (DF184_00410) rpsJ 68350..68658 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  DF184_RS00415 (DF184_00415) rplC 68756..69382 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  DF184_RS00420 (DF184_00420) rplD 69407..70030 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  DF184_RS00425 (DF184_00425) - 70030..70329 (+) 300 WP_004195491.1 50S ribosomal protein L23 -
  DF184_RS00430 (DF184_00430) rplB 70347..71180 (+) 834 WP_002936663.1 50S ribosomal protein L2 -
  DF184_RS00435 (DF184_00435) rpsS 71282..71563 (+) 282 WP_000533766.1 30S ribosomal protein S19 -
  DF184_RS00440 (DF184_00440) rplV 71581..71925 (+) 345 WP_002936662.1 50S ribosomal protein L22 -
  DF184_RS00445 (DF184_00445) rpsC 71938..72591 (+) 654 WP_109371017.1 30S ribosomal protein S3 -
  DF184_RS00450 (DF184_00450) rplP 72595..73008 (+) 414 WP_002936660.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10653.47 Da        Isoelectric Point: 9.1949

>NTDB_id=292251 DF184_RS00405 WP_024383069.1 67762..68028(+) (comX/sigX) [Streptococcus suis strain HN105]
MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDRLLHEDIHGLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRLENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=292251 DF184_RS00405 WP_024383069.1 67762..68028(+) (comX/sigX) [Streptococcus suis strain HN105]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAGGTTAAATTTAGAAACCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCCTCCATGAAGATATTCATGGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGTCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGACTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IEV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

73.973

82.955

0.614
  comX/sigX Streptococcus suis isolate S10

72.603

82.955

0.602
  comX/sigX Streptococcus suis P1/7

72.603

82.955

0.602
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.506

92.045

0.364
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.506

92.045

0.364

Multiple sequence alignment