Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DJ533_RS17390 Genome accession   NZ_CP029397
Coordinates   3111443..3112669 (+) Length   408 a.a.
NCBI ID   WP_065993784.1    Uniprot ID   -
Organism   Acinetobacter defluvii strain WCHA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106443..3117669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS17350 (DJ533_17390) rimP 3106778..3107302 (-) 525 WP_065993780.1 ribosome maturation factor RimP -
  DJ533_RS17375 (DJ533_17415) secG 3108112..3108444 (-) 333 WP_065993781.1 preprotein translocase subunit SecG -
  DJ533_RS17380 (DJ533_17420) tpiA 3108454..3109248 (-) 795 WP_065993782.1 triose-phosphate isomerase -
  DJ533_RS17385 (DJ533_17425) pilB 3109701..3111416 (+) 1716 WP_065993783.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DJ533_RS17390 (DJ533_17430) pilC 3111443..3112669 (+) 1227 WP_065993784.1 type II secretion system F family protein Machinery gene
  DJ533_RS17395 (DJ533_17435) pilD 3112669..3113529 (+) 861 WP_065993785.1 A24 family peptidase Machinery gene
  DJ533_RS17400 (DJ533_17440) coaE 3113542..3114138 (+) 597 WP_065993786.1 dephospho-CoA kinase -
  DJ533_RS17405 (DJ533_17445) - 3114202..3115122 (-) 921 WP_065993787.1 DMT family transporter -
  DJ533_RS17410 (DJ533_17450) rlmB 3115163..3115915 (-) 753 WP_065993788.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DJ533_RS17415 (DJ533_17455) - 3116055..3116378 (-) 324 WP_065993789.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44988.48 Da        Isoelectric Point: 9.9963

>NTDB_id=292243 DJ533_RS17390 WP_065993784.1 3111443..3112669(+) (pilC) [Acinetobacter defluvii strain WCHA30]
MAVKKAQMMPTFIYDGVDRKGVKIKGELPARNMALAKVTLRKQGINIKTIREKKKNIFEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPSMREVVLGIKGEVEGGNTFAGALKKYPQHFDRLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPIAVIVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQTYWFILILGIGVAIT
AFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRLTNKFPSMAIQMVAIGEESGSLDTMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=292243 DJ533_RS17390 WP_065993784.1 3111443..3112669(+) (pilC) [Acinetobacter defluvii strain WCHA30]
ATGGCAGTCAAAAAAGCGCAAATGATGCCAACATTTATTTATGATGGGGTTGATCGTAAAGGGGTTAAAATCAAAGGGGA
GTTGCCTGCACGCAACATGGCTTTAGCAAAAGTGACATTAAGAAAACAAGGCATTAACATTAAAACTATTCGAGAGAAGA
AGAAAAATATTTTTGAAGGTTTAATGAAAAAGAAAGTTTCAACCTTAGACATTACTATTTTTACCCGTCAGCTTGCTACC
ATGATGAAAGCAGGTGTTCCGCTAGTTCAAAGCTTTGAGATAGTAGCCGAAGGTTTAGATAATCCGTCTATGCGTGAAGT
TGTTTTAGGCATTAAAGGGGAGGTTGAAGGGGGTAATACTTTTGCAGGGGCTTTAAAAAAATATCCTCAGCATTTTGACC
GTTTATTTTGTTCACTGGTTGAGTCAGGTGAGCAATCTGGTGCGCTTGAAACCATGTTAGATCGTGTAGCAATCTATAAA
GAAAAAAGCGAACTGTTAAAACAAAAAATTAAAAAAGCCATGAAGTATCCAATTGCTGTGATTGTTGTGGCAATTATCGT
GACAATTATTTTGATGGTTAAAGTTGTTCCTGTCTTCCAAGATTTGTTCTCCTCTTTTGGTGCTGACCTCCCTGCTTTCA
CCCAAATGGTTGTTAATATGTCCAAATGGATGCAAACATATTGGTTTATCCTTATTCTAGGAATTGGCGTAGCCATTACA
GCATTTTTAGAAACCAAAAAACGGAGTAAAAAATTTCGCGATTTCCTAGATAAAGCAGCATTAAAAGCCCCTATTTTTGG
TGACTTGGTCTATAAAGCAATTATTGCACGTTATAGCCGTACACTTGCTACTACTTTTGCAGCCGGTGTCCCCTTGATTG
ATGCCCTAGAATCTACAGCAGGTGCAACCAATAATGTGGTGTATGAAGAAGCCGTCATGAAAATTCGTGATGACGTGGCG
ACTGGTCAGCAATTACAATTTGCTATGCGACTTACCAATAAATTCCCATCGATGGCGATCCAAATGGTTGCGATTGGCGA
AGAATCTGGTTCTCTAGATACGATGTTAGATAAGGTCGCAACGCATTTTGAAAATGAAGTGGACAATGCTGTAGATGGTT
TAACCTCTATGATGGAGCCCTTAATTATGGCGGTATTGGGTGTACTTGTGGGCGGTCTCGTGATCGCAATGTACCTTCCA
ATTTTCCAACTAGGTTCAGTAGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

47.487

97.549

0.463
  pilG Neisseria meningitidis 44/76-A

47.487

97.549

0.463
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

42.157

100

0.422

Multiple sequence alignment