Detailed information NTG0292244

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DJ533_RS17395
• Genome accession: NZ_CP029397
• Coordinates: 3112669..3113529 (+)
• Length: 286 a.a.
• NCBI ID: WP_065993785.1
• Uniprot ID: -
• Organism: Acinetobacter defluvii strain WCHA30
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3107669..3118529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DJ533_RS17375 (DJ533_17415)	secG	3108112..3108444 (-)	333	WP_065993781.1	preprotein translocase subunit SecG	-
DJ533_RS17380 (DJ533_17420)	tpiA	3108454..3109248 (-)	795	WP_065993782.1	triose-phosphate isomerase	-
DJ533_RS17385 (DJ533_17425)	pilB	3109701..3111416 (+)	1716	WP_065993783.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DJ533_RS17390 (DJ533_17430)	pilC	3111443..3112669 (+)	1227	WP_065993784.1	type II secretion system F family protein	Machinery gene
DJ533_RS17395 (DJ533_17435)	pilD	3112669..3113529 (+)	861	WP_065993785.1	A24 family peptidase	Machinery gene
DJ533_RS17400 (DJ533_17440)	coaE	3113542..3114138 (+)	597	WP_065993786.1	dephospho-CoA kinase	-
DJ533_RS17405 (DJ533_17445)	-	3114202..3115122 (-)	921	WP_065993787.1	DMT family transporter	-
DJ533_RS17410 (DJ533_17450)	rlmB	3115163..3115915 (-)	753	WP_065993788.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DJ533_RS17415 (DJ533_17455)	-	3116055..3116378 (-)	324	WP_065993789.1	pyrimidine/purine nucleoside phosphorylase	-
DJ533_RS17420 (DJ533_17460)	recN	3116649..3118310 (+)	1662	WP_065993790.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31746.10 Da
• Isoelectric Point: 7.7882

>NTDB_id=292244 DJ533_RS17395 WP_065993785.1 3112669..3113529(+) (pilD) [Acinetobacter defluvii strain WCHA30]
MTDILNYFITTPSALYLVIAVLGLCIGSFLNVVIYRTPKMMEQEWHQECQLLLHPEQAIIEHSKLTLSTPASTCPKCKSP
IHWYQNIPVLSWLFLKGKCGSCQNPISIRYPFVELLTACCSLLVVAVYGPTLAMLFGLILTWTLIALTFIDFDTQLLPDR
LTLPLAALGLGVNSFAIYTSANAAIWGYILGFLCLWVVYYVFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=292244 DJ533_RS17395 WP_065993785.1 3112669..3113529(+) (pilD) [Acinetobacter defluvii strain WCHA30]
ATGACTGATATTCTTAATTATTTCATTACAACACCCAGTGCACTTTATCTTGTCATTGCCGTACTGGGTTTATGCATTGG
TAGTTTTTTAAATGTGGTGATCTATCGCACACCGAAAATGATGGAACAAGAATGGCATCAAGAATGCCAACTCTTACTCC
ACCCTGAACAAGCGATTATTGAGCACAGTAAACTTACTTTAAGCACACCTGCTTCTACTTGCCCAAAATGCAAATCACCA
ATTCATTGGTATCAAAATATTCCTGTACTAAGTTGGTTATTCCTTAAAGGAAAATGTGGTAGTTGCCAAAACCCGATTAG
CATTCGCTATCCATTTGTCGAGCTATTAACTGCATGCTGTTCACTTTTGGTTGTGGCTGTTTACGGCCCTACACTTGCGA
TGTTGTTTGGTTTAATCCTAACTTGGACACTGATTGCTTTAACTTTTATTGATTTTGATACACAGTTATTACCTGATCGC
TTGACCTTACCTCTTGCTGCACTTGGTTTAGGCGTGAATAGCTTTGCGATTTATACCTCTGCAAATGCAGCAATTTGGGG
ATATATCCTAGGCTTTTTATGCTTATGGGTGGTCTATTATGTATTTAAGCTCATTACGGGCAAAGAAGGCATGGGCTATG
GCGATTTTAAATTACTCGCTGCACTAGGGGCGTGGATGGGTCCTCTTCTGTTACCTCTTATCGTGCTTCTATCCTCTTTG
GTTGGTGCAATTATTGGAATTATTTTACTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCATTTGGTCCTTACATCGCAAT
TGCGGGGTGGATTGCTTTTTTATGGGGCGAGCAAATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	77.895	99.65	0.776
pilD	Acinetobacter nosocomialis M2	77.895	99.65	0.776
pilD	Vibrio cholerae strain A1552	54.643	97.902	0.535
pilD	Vibrio campbellii strain DS40M4	51.825	95.804	0.497
pilD	Neisseria gonorrhoeae MS11	49.237	91.608	0.451