Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DIW83_RS17680 Genome accession   NZ_CP029351
Coordinates   3648420..3649646 (+) Length   408 a.a.
NCBI ID   WP_004710832.1    Uniprot ID   K9B765
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3643420..3654646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS17645 (DIW83_17645) rimP 3644092..3644616 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  DIW83_RS17665 (DIW83_17665) secG 3645253..3645582 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  DIW83_RS17670 (DIW83_17670) tpiA 3645595..3646389 (-) 795 WP_004710827.1 triose-phosphate isomerase -
  DIW83_RS17675 (DIW83_17675) pilB 3646680..3648392 (+) 1713 WP_016803974.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DIW83_RS17680 (DIW83_17680) pilC 3648420..3649646 (+) 1227 WP_004710832.1 type II secretion system F family protein Machinery gene
  DIW83_RS19735 (DIW83_17685) pilD 3649646..3650506 (+) 861 WP_016803975.1 prepilin peptidase Machinery gene
  DIW83_RS17690 (DIW83_17690) coaE 3650508..3651104 (+) 597 WP_016803976.1 dephospho-CoA kinase -
  DIW83_RS17695 (DIW83_17695) - 3651101..3652015 (-) 915 WP_017398155.1 DMT family transporter -
  DIW83_RS17700 (DIW83_17700) rlmB 3652051..3652800 (-) 750 WP_016803977.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DIW83_RS17705 (DIW83_17705) - 3652902..3653228 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  DIW83_RS17710 (DIW83_17710) - 3653305..3654615 (-) 1311 WP_017398154.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45015.53 Da        Isoelectric Point: 9.8883

>NTDB_id=291914 DIW83_RS17680 WP_004710832.1 3648420..3649646(+) (pilC) [Acinetobacter nosocomialis strain NCTC 8102]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=291914 DIW83_RS17680 WP_004710832.1 3648420..3649646(+) (pilC) [Acinetobacter nosocomialis strain NCTC 8102]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGGTTATTTAAGAAAAAAGTAACTACACTCGATATTACGATTTTTACCCGACAACTTGCGACT
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAGTCAGGTGCACTCGAAACGATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATTAAGAAAGCAATGAAATACCCTGCAACAGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTGCCCGTTTTCCAAGATTTATTTGCTTCTTTCGGCGCAGAATTACCAGCATTTA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCAATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCACTAGAGTCGACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTAGCA
ACCGGCCAACAGCTTCAGTTTGCTATGCGAGTATCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9B765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

98.039

100

0.98
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment