Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DIR46_RS08785 | Genome accession | NZ_CP029343 |
| Coordinates | 1904917..1906149 (+) | Length | 410 a.a. |
| NCBI ID | WP_109344901.1 | Uniprot ID | A0A2S2DGQ6 |
| Organism | Massilia oculi strain CCUG 43427 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1899917..1911149
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DIR46_RS08770 (DIR46_08770) | - | 1900901..1901305 (+) | 405 | WP_109344898.1 | hypothetical protein | - |
| DIR46_RS08775 (DIR46_08775) | - | 1901397..1902965 (+) | 1569 | WP_109344899.1 | methyl-accepting chemotaxis protein | - |
| DIR46_RS08780 (DIR46_08780) | pilF | 1903168..1904895 (+) | 1728 | WP_109344900.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DIR46_RS08785 (DIR46_08785) | pilC | 1904917..1906149 (+) | 1233 | WP_109344901.1 | type II secretion system F family protein | Machinery gene |
| DIR46_RS08790 (DIR46_08790) | - | 1906228..1907598 (-) | 1371 | WP_109344902.1 | hypothetical protein | - |
| DIR46_RS08795 (DIR46_08795) | - | 1907696..1909801 (-) | 2106 | WP_109344903.1 | glycoside hydrolase family 36 protein | - |
| DIR46_RS08800 (DIR46_08800) | - | 1909856..1910701 (-) | 846 | WP_109344904.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 44928.01 Da Isoelectric Point: 10.1210
>NTDB_id=291788 DIR46_RS08785 WP_109344901.1 1904917..1906149(+) (pilC) [Massilia oculi strain CCUG 43427]
MATSPQPKSRGVQVKENVYAWEGKDKTGRVVRGEVRAGGEAIVNVTLRRQGIMVTKVKKKVYRSGKKITDKDLTMFTRQL
ATMMKAGVPLLQSFDIVGKGHSNPSMAKLIQDLRNDVETGTSLNRAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAI
YKEKTLALKGKIKSALTYPIAILAVALIVTAVIMIWVVPAFKQVFSSFGADLPTPTVVVMAISDFVVEWWYIIFGSLFAG
LYLFFQAWRRSLRMQQVMDRLLLRLPIFGSVIRKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYLEATRKIQNE
VSTGTSLTASMQNADVFPNLVIQMVQIGEESGSLDAMLGKVADFFEDEVDEAVAALSSLMEPLIMVILGVLIGGLVVAMY
LPIFKLGSVV
MATSPQPKSRGVQVKENVYAWEGKDKTGRVVRGEVRAGGEAIVNVTLRRQGIMVTKVKKKVYRSGKKITDKDLTMFTRQL
ATMMKAGVPLLQSFDIVGKGHSNPSMAKLIQDLRNDVETGTSLNRAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAI
YKEKTLALKGKIKSALTYPIAILAVALIVTAVIMIWVVPAFKQVFSSFGADLPTPTVVVMAISDFVVEWWYIIFGSLFAG
LYLFFQAWRRSLRMQQVMDRLLLRLPIFGSVIRKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYLEATRKIQNE
VSTGTSLTASMQNADVFPNLVIQMVQIGEESGSLDAMLGKVADFFEDEVDEAVAALSSLMEPLIMVILGVLIGGLVVAMY
LPIFKLGSVV
Nucleotide
Download Length: 1233 bp
>NTDB_id=291788 DIR46_RS08785 WP_109344901.1 1904917..1906149(+) (pilC) [Massilia oculi strain CCUG 43427]
ATGGCAACATCCCCCCAACCCAAGAGCCGTGGCGTGCAGGTCAAGGAGAACGTTTACGCCTGGGAAGGCAAGGACAAGAC
CGGCCGCGTCGTGCGCGGCGAAGTGCGCGCCGGCGGAGAAGCGATCGTCAACGTGACCCTGCGCCGCCAGGGCATCATGG
TGACCAAGGTCAAGAAGAAGGTCTACCGCAGCGGCAAGAAAATCACCGACAAGGACCTGACCATGTTCACGCGCCAGCTC
GCGACCATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCACAGCAACCCGTCGATGGC
CAAGCTGATCCAGGACCTGCGCAACGACGTCGAGACCGGCACCAGCCTGAACCGCGCCTTCCGCAAGTTCCCGCTGTACT
TCGATCCGCTGTTCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATC
TACAAGGAAAAGACGCTGGCGCTCAAGGGCAAGATCAAGTCGGCCCTGACCTATCCGATCGCGATCCTGGCGGTGGCCCT
GATCGTCACCGCCGTGATCATGATCTGGGTGGTGCCGGCGTTCAAGCAGGTGTTCTCGAGCTTTGGCGCCGACCTGCCGA
CCCCGACCGTGGTGGTGATGGCGATCTCGGACTTCGTGGTGGAGTGGTGGTACATCATCTTCGGCTCGCTGTTCGCCGGG
CTGTACCTGTTCTTCCAGGCCTGGCGCCGCTCGCTCAGGATGCAGCAGGTGATGGACCGCCTGCTGCTGCGCCTGCCGAT
CTTCGGCAGCGTGATCCGCAAGGCCACCATCGCGCGCTGGACGCGCACCCTGTCGACCATGTTCGCGGCCGGCGTGCCGC
TGGTGGAAGCGCTCGACTCGGTCGGCGGGGCGTCGGGCAATGCGGTCTACCTGGAAGCCACGCGCAAGATCCAGAACGAG
GTGAGCACCGGCACCAGCCTGACCGCCTCGATGCAGAATGCGGACGTGTTCCCGAACCTTGTGATCCAGATGGTGCAGAT
CGGCGAAGAGTCGGGGTCGCTCGATGCGATGCTGGGCAAGGTGGCGGATTTCTTCGAGGATGAGGTCGATGAGGCGGTGG
CGGCGCTGTCGTCGCTGATGGAGCCGCTCATCATGGTCATTCTTGGGGTGTTGATTGGCGGGCTGGTGGTCGCGATGTAT
TTGCCGATCTTCAAGCTGGGCTCGGTGGTGTAA
ATGGCAACATCCCCCCAACCCAAGAGCCGTGGCGTGCAGGTCAAGGAGAACGTTTACGCCTGGGAAGGCAAGGACAAGAC
CGGCCGCGTCGTGCGCGGCGAAGTGCGCGCCGGCGGAGAAGCGATCGTCAACGTGACCCTGCGCCGCCAGGGCATCATGG
TGACCAAGGTCAAGAAGAAGGTCTACCGCAGCGGCAAGAAAATCACCGACAAGGACCTGACCATGTTCACGCGCCAGCTC
GCGACCATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCACAGCAACCCGTCGATGGC
CAAGCTGATCCAGGACCTGCGCAACGACGTCGAGACCGGCACCAGCCTGAACCGCGCCTTCCGCAAGTTCCCGCTGTACT
TCGATCCGCTGTTCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATC
TACAAGGAAAAGACGCTGGCGCTCAAGGGCAAGATCAAGTCGGCCCTGACCTATCCGATCGCGATCCTGGCGGTGGCCCT
GATCGTCACCGCCGTGATCATGATCTGGGTGGTGCCGGCGTTCAAGCAGGTGTTCTCGAGCTTTGGCGCCGACCTGCCGA
CCCCGACCGTGGTGGTGATGGCGATCTCGGACTTCGTGGTGGAGTGGTGGTACATCATCTTCGGCTCGCTGTTCGCCGGG
CTGTACCTGTTCTTCCAGGCCTGGCGCCGCTCGCTCAGGATGCAGCAGGTGATGGACCGCCTGCTGCTGCGCCTGCCGAT
CTTCGGCAGCGTGATCCGCAAGGCCACCATCGCGCGCTGGACGCGCACCCTGTCGACCATGTTCGCGGCCGGCGTGCCGC
TGGTGGAAGCGCTCGACTCGGTCGGCGGGGCGTCGGGCAATGCGGTCTACCTGGAAGCCACGCGCAAGATCCAGAACGAG
GTGAGCACCGGCACCAGCCTGACCGCCTCGATGCAGAATGCGGACGTGTTCCCGAACCTTGTGATCCAGATGGTGCAGAT
CGGCGAAGAGTCGGGGTCGCTCGATGCGATGCTGGGCAAGGTGGCGGATTTCTTCGAGGATGAGGTCGATGAGGCGGTGG
CGGCGCTGTCGTCGCTGATGGAGCCGCTCATCATGGTCATTCTTGGGGTGTTGATTGGCGGGCTGGTGGTCGCGATGTAT
TTGCCGATCTTCAAGCTGGGCTCGGTGGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
54.798 |
96.585 |
0.529 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.75 |
97.561 |
0.524 |
| pilG | Neisseria gonorrhoeae MS11 |
51.889 |
96.829 |
0.502 |
| pilC | Acinetobacter baylyi ADP1 |
51.256 |
97.073 |
0.498 |
| pilG | Neisseria meningitidis 44/76-A |
51.385 |
96.829 |
0.498 |
| pilC | Acinetobacter baumannii D1279779 |
51.134 |
96.829 |
0.495 |
| pilC | Vibrio cholerae strain A1552 |
40.25 |
97.561 |
0.393 |
| pilC | Vibrio campbellii strain DS40M4 |
40.554 |
96.829 |
0.393 |
| pilC | Thermus thermophilus HB27 |
38.095 |
97.317 |
0.371 |