Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DGM85_RS05720 Genome accession   NZ_CP029280
Coordinates   1336925..1338181 (-) Length   418 a.a.
NCBI ID   WP_039573972.1    Uniprot ID   A0A3Q9Q1T7
Organism   Xanthomonas phaseoli pv. phaseoli strain Px100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1334181..1348761 1336925..1338181 within 0


Gene organization within MGE regions


Location: 1334181..1348761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM85_RS05705 - 1334181..1335251 (-) 1071 WP_157926032.1 RHS repeat domain-containing protein -
  DGM85_RS05710 (DGM85_05995) coaE 1335433..1336044 (-) 612 WP_041019488.1 dephospho-CoA kinase -
  DGM85_RS05715 (DGM85_06000) - 1336055..1336918 (-) 864 WP_039573976.1 A24 family peptidase -
  DGM85_RS05720 (DGM85_06005) pilC 1336925..1338181 (-) 1257 WP_039573972.1 type II secretion system F family protein Machinery gene
  DGM85_RS05725 (DGM85_06010) pilA 1338536..1338976 (+) 441 WP_039568292.1 pilin Machinery gene
  DGM85_RS05730 (DGM85_06015) - 1339086..1339541 (+) 456 WP_039568290.1 pilin -
  DGM85_RS05735 (DGM85_06020) pilB 1339633..1341342 (+) 1710 WP_180959844.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DGM85_RS05740 (DGM85_06030) - 1341587..1341706 (+) 120 WP_039568289.1 hypothetical protein -
  DGM85_RS05745 (DGM85_06035) - 1341768..1341914 (+) 147 WP_080948799.1 serine/threonine protein kinase -
  DGM85_RS05750 (DGM85_06040) pilR 1342111..1343565 (-) 1455 WP_039568287.1 sigma-54 dependent transcriptional regulator Regulator
  DGM85_RS05755 (DGM85_06045) - 1343836..1345449 (-) 1614 WP_039568284.1 HAMP domain-containing sensor histidine kinase -
  DGM85_RS05760 (DGM85_06050) sucC 1345681..1346850 (+) 1170 WP_039568282.1 ADP-forming succinate--CoA ligase subunit beta -
  DGM85_RS05765 (DGM85_06055) sucD 1346875..1347750 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  DGM85_RS05770 (DGM85_06060) - 1348212..1348496 (+) 285 Protein_1142 hypothetical protein -
  DGM85_RS05775 (DGM85_06065) - 1348561..1348677 (+) 117 Protein_1143 DUF559 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45411.79 Da        Isoelectric Point: 10.2788

>NTDB_id=291585 DGM85_RS05720 WP_039573972.1 1336925..1338181(-) (pilC) [Xanthomonas phaseoli pv. phaseoli strain Px100]
MSAVRNAVKTKTAAPAEQMSPFIWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALIGAAIGSVFAYKRSPAMQHGMDRLVLKAPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=291585 DGM85_RS05720 WP_039573972.1 1336925..1338181(-) (pilC) [Xanthomonas phaseoli pv. phaseoli strain Px100]
ATGTCAGCAGTACGTAACGCAGTCAAGACGAAGACCGCCGCACCGGCGGAGCAGATGAGCCCGTTTATCTGGGAGGGAAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGTGCCGAGCTGCGACGCCAGG
GCATTACCCCCCTCGTTGTGAAAGTTAAGCCGAAGCCACTATTCGGCGCTGCAGGAAAGAAGGTCTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAATCGGGCGTGCCGATTGTCGGCGCGCTAGAGATCATTGGTAGCGG
CCAGAAAAATCCGCGCATGCGCACAATGGTTGGCCAGATCAGGACAGATATCGAAGGCGGGGCATCGCTTTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAAGCAGGCGAAGGCGCAGGCGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAGAACCTTGAAGCCCTAAAAGGCAAGATCAAGAAGGCCCTGTTCTACCCTGC
CATGGTAATGGCGGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCCCAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCTGAGCTGCCTGCTTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTATTGGCGCTGCAATCGGTTCTGTTTTCGCGTACAAACGTTCACCAGCAATGCAACATGGCATGGACCG
TTTAGTGCTAAAAGCGCCAATCATTGGCCAGATCATGCATAACAGCTCAATTGCAAGATTCGCCCGGACAACGGCGGTTA
CATTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGCAACTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCGGTGGGCTACCCGGTCAACGTAGCGATGAAACAGGTCAACCTGTTTCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAAGCGGGCGCGCTGGATGCCATGTTGTTCAAGGTGGCTGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q1T7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.696

97.608

0.514
  pilC Pseudomonas stutzeri DSM 10701

52.593

96.89

0.51
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

43.21

96.89

0.419
  pilG Neisseria gonorrhoeae MS11

43.069

96.651

0.416
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.706

97.608

0.388

Multiple sequence alignment