Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DG474_RS09570 Genome accession   NZ_CP029257
Coordinates   1999793..2000989 (+) Length   398 a.a.
NCBI ID   WP_000681803.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1994793..2005989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS09530 (DG474_09680) - 1995852..1996394 (+) 543 WP_000665080.1 TetR/AcrR family transcriptional regulator -
  DG474_RS09545 (DG474_09695) comE 1996632..1997384 (-) 753 WP_000866079.1 competence system response regulator transcription factor ComE Regulator
  DG474_RS09550 (DG474_09700) comD 1997381..1998700 (-) 1320 WP_255778222.1 competence system sensor histidine kinase ComD Regulator
  DG474_RS09555 (DG474_09705) comC/comC1 1998721..1998846 (-) 126 WP_008282505.1 competence-stimulating peptide ComC Regulator
  DG474_RS09565 (DG474_09715) rlmH 1999128..1999607 (-) 480 WP_255778224.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DG474_RS09570 (DG474_09720) htrA 1999793..2000989 (+) 1197 WP_000681803.1 S1C family serine protease Regulator
  DG474_RS09575 (DG474_09725) spo0J 2001047..2001805 (+) 759 WP_000410359.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41985.76 Da        Isoelectric Point: 6.6581

>NTDB_id=291453 DG474_RS09570 WP_000681803.1 1999793..2000989(+) (htrA) [Streptococcus oralis strain CCUG 53468]
MKHLQKFYKKGVKVLAIILIGFLSGALGSFVTLQLYQKQGNQATNNNSGTVTQTSYKNENSTTQAVNKVKDAVVSIITYS
SSSSRQSSVFNGDETNSDSDNQQIASEGSGVIYKKDDKDAYLVTNTHVINGASKVDIRLADGTKVPGEIVGSDTFSDIAV
VKISSEKVTTVAEFGDSSQLSVGETAIAIGSPLGSEYANTVTQGIISSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSG
GPLVNIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDAQNIIKQLESNGKVTRPALGIQMVNLSNVGASDLRKLNIPSSL
TSGVVVRSVQNNMPANGHLQKYDVITKVDDKEIASSTDLQHALYNHAIGDTIKVTYYRNGKEETTSIKLDKNSGDLES

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=291453 DG474_RS09570 WP_000681803.1 1999793..2000989(+) (htrA) [Streptococcus oralis strain CCUG 53468]
ATGAAACACTTACAAAAATTTTACAAAAAAGGAGTTAAAGTTCTTGCAATCATTCTAATAGGATTTTTAAGTGGTGCCTT
AGGAAGTTTCGTAACATTACAACTTTATCAAAAACAAGGAAATCAAGCTACGAATAATAATTCTGGCACTGTCACTCAAA
CATCATATAAGAATGAAAATTCAACCACTCAAGCAGTAAATAAAGTTAAGGATGCTGTTGTCTCAATCATTACTTATTCT
TCTTCTAGCAGTAGACAAAGTAGTGTATTTAATGGTGATGAAACTAATTCTGATTCAGACAATCAACAAATCGCAAGTGA
GGGATCAGGTGTTATCTATAAAAAAGATGATAAAGATGCCTATCTTGTAACTAATACTCACGTTATCAATGGAGCTTCAA
AAGTTGATATTCGCTTGGCAGATGGTACCAAGGTTCCTGGTGAAATTGTCGGATCTGATACTTTCTCTGATATTGCTGTC
GTTAAAATTTCTTCAGAAAAAGTTACAACAGTAGCAGAATTTGGGGATTCAAGCCAACTTAGTGTTGGAGAAACAGCGAT
TGCTATTGGTAGTCCTCTAGGTTCAGAATATGCTAATACAGTTACACAGGGAATCATCTCAAGTCTTAATCGAAATGTTT
CTCTAAAATCTGAAGATGGTCAAGCTATTTCAACAAAAGCCATTCAAACAGATACGGCTATTAACCCTGGTAACTCTGGT
GGTCCACTTGTAAACATTCAAGGACAAGTAATTGGTATTACATCAAGTAAAATTGCAAGTAATGGTGGAACATCTGTAGA
AGGTCTTGGTTTTGCAATTCCTTCAAACGATGCACAAAATATCATTAAACAGCTTGAAAGTAATGGTAAAGTGACTCGTC
CAGCTCTTGGAATTCAAATGGTCAATCTGTCAAATGTTGGAGCTAGTGATCTTAGAAAACTTAACATTCCAAGTAGCCTC
ACTTCAGGTGTAGTTGTTCGATCTGTTCAAAACAATATGCCAGCAAATGGACATCTTCAAAAATACGATGTCATTACCAA
AGTTGACGACAAAGAGATTGCTTCATCAACAGACCTACAACACGCTCTTTACAATCATGCTATCGGAGATACTATCAAAG
TAACCTACTACCGTAATGGTAAGGAGGAAACAACCTCAATTAAACTAGATAAGAATTCTGGTGATTTAGAGTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

83.668

100

0.837

  htrA Streptococcus pneumoniae Rx1

82.915

100

0.829

  htrA Streptococcus pneumoniae D39

82.915

100

0.829

  htrA Streptococcus pneumoniae R6

82.915

100

0.829

  htrA Streptococcus pneumoniae TIGR4

82.915

100

0.829

  htrA Streptococcus gordonii str. Challis substr. CH1

66.915

100

0.676

  htrA Streptococcus mutans UA159

54.822

98.995

0.543


Multiple sequence alignment