Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DEH84_RS13790 Genome accession   NZ_CP029210
Coordinates   3076288..3077511 (+) Length   407 a.a.
NCBI ID   WP_109037372.1    Uniprot ID   A0A2U8FVZ2
Organism   Aquabacterium olei strain NBRC 110486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3071288..3082511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH84_RS13775 (DEH84_13775) waaC 3071631..3072605 (+) 975 WP_109037369.1 lipopolysaccharide heptosyltransferase I -
  DEH84_RS13780 (DEH84_13780) - 3072631..3074361 (+) 1731 WP_109037370.1 ABC transporter transmembrane domain-containing protein -
  DEH84_RS13785 (DEH84_13785) pilB 3074526..3076250 (+) 1725 WP_109037371.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DEH84_RS13790 (DEH84_13790) pilC 3076288..3077511 (+) 1224 WP_109037372.1 type II secretion system F family protein Machinery gene
  DEH84_RS13795 (DEH84_13795) - 3077519..3078394 (+) 876 WP_109037373.1 A24 family peptidase -
  DEH84_RS13800 (DEH84_13800) coaE 3078394..3079014 (+) 621 WP_170119677.1 dephospho-CoA kinase -
  DEH84_RS13805 (DEH84_13805) zapD 3079033..3079791 (+) 759 WP_109037374.1 cell division protein ZapD -
  DEH84_RS13810 (DEH84_13810) - 3079817..3080035 (+) 219 WP_109037375.1 DNA gyrase inhibitor YacG -
  DEH84_RS13815 (DEH84_13815) - 3080029..3082500 (-) 2472 WP_109037376.1 ligase-associated DNA damage response DEXH box helicase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44319.87 Da        Isoelectric Point: 9.5213

>NTDB_id=291244 DEH84_RS13790 WP_109037372.1 3076288..3077511(+) (pilC) [Aquabacterium olei strain NBRC 110486]
MATAAAKKSAPQEYVFEWEGKDRNGKVVRGEMRAGGEAMVGASLRRQGILVNKVKRRRMSGGSSIKPKDIAIFTRQLATM
MRAGVPLLQSFDIVARGSTNPRVTKLLNDIRSDVETGTSLSMAFRKHPLHFDHLYCNLVEAGEAAGILETLLDRLATYQE
KTIAIKQKIKSALTYPTAVLVVAFIVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVMGMSEIFVSYWWAIFGSIGGGVYF
FLQSWKRSEAMQKKMDRLLLKAPVFGDLMYKSAVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFAEATEQIQKDVST
GTGLTNAMQTTGLFPVMVLQMASIGEESGSLDQMLGKAADFYEEEVDEAVKALSSLMEPFIIVFLGTVIGGIVVSMYLPI
FKLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=291244 DEH84_RS13790 WP_109037372.1 3076288..3077511(+) (pilC) [Aquabacterium olei strain NBRC 110486]
ATGGCCACGGCAGCAGCCAAGAAATCCGCCCCTCAGGAATACGTCTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
GGTCCGCGGCGAGATGCGCGCCGGCGGTGAAGCGATGGTGGGGGCCAGCCTGCGCCGCCAGGGCATCCTGGTCAACAAGG
TCAAGCGGCGCCGCATGAGCGGTGGCTCGTCCATCAAGCCGAAAGACATCGCGATCTTCACGCGCCAGCTGGCCACCATG
ATGCGCGCTGGCGTGCCCCTGCTGCAGTCGTTCGACATCGTGGCGCGCGGCAGCACCAATCCGCGGGTCACCAAGCTGCT
CAACGACATCCGCTCGGACGTCGAGACCGGCACCAGCCTGTCGATGGCCTTCCGCAAGCACCCGCTGCACTTCGACCACC
TGTACTGCAACCTGGTCGAGGCCGGCGAGGCCGCCGGTATCCTGGAAACCCTGCTCGATCGCCTGGCCACCTACCAGGAA
AAAACGATCGCCATCAAGCAGAAGATCAAGTCGGCCCTGACCTACCCCACCGCCGTGCTGGTGGTCGCCTTCATCGTGGT
CGCCGTCATCATGATCTTCGTGATCCCGGCGTTCAAGGAAGTCTTCACCTCCTTCGGTGCCGACCTGCCGGCTCCCACGC
TGTTCGTGATGGGCATGTCGGAGATCTTCGTCAGTTACTGGTGGGCCATCTTCGGCTCCATCGGCGGGGGCGTGTATTTC
TTCCTGCAGTCCTGGAAGCGCTCCGAGGCCATGCAGAAGAAGATGGACCGCCTGCTGCTGAAGGCCCCGGTGTTCGGCGA
CCTGATGTACAAGTCGGCGGTGGCCCGCTGGACGCGCACGCTGTCGACCATGTTTGCAGCGGGCGTGCCCCTGGTGGAAG
CGCTCGACTCGGTGGGCGGCGCCTCAGGCAACGCGGTGTTTGCGGAAGCCACCGAGCAGATCCAGAAGGACGTCTCGACC
GGCACGGGCCTGACCAACGCCATGCAGACCACGGGCCTGTTCCCGGTGATGGTGCTGCAGATGGCTTCGATCGGCGAAGA
ATCGGGCTCGCTCGACCAGATGCTGGGCAAGGCGGCCGACTTCTACGAAGAAGAGGTGGACGAAGCCGTGAAGGCGCTGT
CCAGCCTGATGGAACCCTTCATCATCGTGTTCCTGGGCACGGTGATTGGCGGCATTGTTGTGTCGATGTACCTGCCGATC
TTCAAGCTGGGTCAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FVZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.39

100

0.548
  pilG Neisseria meningitidis 44/76-A

53.133

98.034

0.521
  pilG Neisseria gonorrhoeae MS11

53.133

98.034

0.521
  pilC Legionella pneumophila strain ERS1305867

50.99

99.263

0.506
  pilC Acinetobacter baylyi ADP1

48.775

100

0.489
  pilC Acinetobacter baumannii D1279779

48.157

100

0.482
  pilC Vibrio campbellii strain DS40M4

40.777

100

0.413
  pilC Vibrio cholerae strain A1552

42.172

97.297

0.41
  pilC Thermus thermophilus HB27

39

98.28

0.383

Multiple sequence alignment