Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A0I22_RS16600 Genome accession   NZ_CP034803
Coordinates   3226726..3227394 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain 2009C-3554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3221726..3232394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I22_RS16570 yicC 3221745..3222608 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  A0I22_RS16575 rph 3222735..3223451 (+) 717 WP_001247093.1 ribonuclease PH -
  A0I22_RS16580 pyrE 3223517..3224158 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  A0I22_RS16585 slmA 3224195..3224791 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A0I22_RS16590 dut 3224898..3225356 (-) 459 WP_000976070.1 dUTP diphosphatase -
  A0I22_RS16595 coaBC 3225334..3226554 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A0I22_RS16600 radC 3226726..3227394 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  A0I22_RS16605 rpmB 3227611..3227847 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  A0I22_RS16610 rpmG 3227868..3228035 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  A0I22_RS16615 mutM 3228133..3228942 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A0I22_RS16620 coaD 3228981..3229460 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  A0I22_RS16625 waaA 3229468..3230745 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A0I22_RS16630 rfaQ 3231158..3232216 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=291243 A0I22_RS16600 WP_001297375.1 3226726..3227394(+) (radC) [Escherichia coli strain 2009C-3554]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=291243 A0I22_RS16600 WP_001297375.1 3226726..3227394(+) (radC) [Escherichia coli strain 2009C-3554]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment