Detailed information NTG0291189

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DEH83_RS05590
• Genome accession: NZ_CP029207
• Coordinates: 1091456..1091884 (+)
• Length: 142 a.a.
• NCBI ID: WP_255776367.1
• Uniprot ID: -
• Organism: Streptococcus constellatus strain TCV107
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1086456..1096884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEH83_RS05560 (DEH83_05545)	-	1086910..1087269 (+)	360	WP_003070793.1	MerR family transcriptional regulator	-
DEH83_RS05565 (DEH83_05550)	glnA	1087308..1088654 (+)	1347	WP_006269977.1	type I glutamate--ammonia ligase	-
DEH83_RS05570 (DEH83_05555)	-	1088842..1089207 (+)	366	WP_255776366.1	DUF1033 family protein	-
DEH83_RS05575 (DEH83_05560)	comYA	1089277..1090218 (+)	942	WP_219123646.1	competence type IV pilus ATPase ComGA	Machinery gene
DEH83_RS05580 (DEH83_05565)	comYB	1090160..1091182 (+)	1023	WP_255777234.1	competence type IV pilus assembly protein ComGB	Machinery gene
DEH83_RS05585 (DEH83_05570)	comYC	1091179..1091496 (+)	318	WP_006269985.1	competence type IV pilus major pilin ComGC	Machinery gene
DEH83_RS05590 (DEH83_05575)	comYD	1091456..1091884 (+)	429	WP_255776367.1	competence type IV pilus minor pilin ComGD	Machinery gene
DEH83_RS05595 (DEH83_05580)	comGE/cglE	1091856..1092149 (+)	294	WP_006269989.1	competence type IV pilus minor pilin ComGE	Machinery gene
DEH83_RS05600 (DEH83_05585)	comGF/cglF	1092133..1092570 (+)	438	WP_049476068.1	competence type IV pilus minor pilin ComGF	Machinery gene
DEH83_RS05605 (DEH83_05590)	comGG	1092551..1092877 (+)	327	WP_003070783.1	competence type IV pilus minor pilin ComGG	-
DEH83_RS05610 (DEH83_05595)	comYH	1092962..1093915 (+)	954	WP_255776368.1	class I SAM-dependent methyltransferase	Machinery gene
DEH83_RS05615 (DEH83_05600)	-	1093962..1095161 (+)	1200	WP_255776369.1	acetate kinase	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 16216.65 Da
• Isoelectric Point: 10.3557

>NTDB_id=291189 DEH83_RS05590 WP_255776367.1 1091456..1091884(+) (comYD) [Streptococcus constellatus strain TCV107]
MQNIQKKLVQLQIKGFTLLESLLTLFMTSLLLLAVSSSVRSSFEQVEQQIFFLEFEHFYRESQKLSSAAQSQLDMNFSRE
RISNGYSHLAVPRSIQAPEGLTLHFDRAGGNSSLGKVVFQTNKQTITYQLYLGNGKFKKTMR

Nucleotide

• Length: 429 bp

>NTDB_id=291189 DEH83_RS05590 WP_255776367.1 1091456..1091884(+) (comYD) [Streptococcus constellatus strain TCV107]
ATGCAAAACATACAAAAGAAGCTCGTACAGTTGCAGATTAAAGGTTTTACGCTTTTGGAAAGTTTGCTGACCTTATTTAT
GACGAGTCTCTTATTGCTTGCTGTATCAAGTTCAGTACGTTCATCGTTTGAGCAAGTAGAACAGCAAATTTTCTTTCTAG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTGCAGCTCAAAGTCAGTTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAGCCATTTGGCAGTTCCTCGCTCGATTCAGGCTCCGGAAGGCCTGACACTTCATTTTGACAG
GGCAGGCGGCAATTCCTCGCTCGGAAAGGTTGTCTTTCAGACAAATAAGCAAACAATTACGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATGCGTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	61.194	94.366	0.577
comGD/cglD	Streptococcus mitis NCTC 12261	59.69	90.845	0.542
comGD/cglD	Streptococcus mitis SK321	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae Rx1	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae D39	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae R6	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae TIGR4	58.268	89.437	0.521
comYD	Streptococcus mutans UA140	50	91.549	0.458
comYD	Streptococcus mutans UA159	50	91.549	0.458