Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DEH83_RS05580 Genome accession   NZ_CP029207
Coordinates   1090160..1091182 (+) Length   340 a.a.
NCBI ID   WP_255777234.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085160..1096182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS05545 (DEH83_05530) - 1085671..1085877 (+) 207 WP_006268044.1 hypothetical protein -
  DEH83_RS05550 (DEH83_05535) - 1085880..1086164 (+) 285 WP_006269982.1 2'-5' RNA ligase family protein -
  DEH83_RS05555 (DEH83_05540) - 1086303..1086833 (+) 531 WP_003027011.1 aromatic acid exporter family protein -
  DEH83_RS05560 (DEH83_05545) - 1086910..1087269 (+) 360 WP_003070793.1 MerR family transcriptional regulator -
  DEH83_RS05565 (DEH83_05550) glnA 1087308..1088654 (+) 1347 WP_006269977.1 type I glutamate--ammonia ligase -
  DEH83_RS05570 (DEH83_05555) - 1088842..1089207 (+) 366 WP_255776366.1 DUF1033 family protein -
  DEH83_RS05575 (DEH83_05560) comYA 1089277..1090218 (+) 942 WP_219123646.1 competence type IV pilus ATPase ComGA Machinery gene
  DEH83_RS05580 (DEH83_05565) comYB 1090160..1091182 (+) 1023 WP_255777234.1 competence type IV pilus assembly protein ComGB Machinery gene
  DEH83_RS05585 (DEH83_05570) comYC 1091179..1091496 (+) 318 WP_006269985.1 competence type IV pilus major pilin ComGC Machinery gene
  DEH83_RS05590 (DEH83_05575) comYD 1091456..1091884 (+) 429 WP_255776367.1 competence type IV pilus minor pilin ComGD Machinery gene
  DEH83_RS05595 (DEH83_05580) comGE/cglE 1091856..1092149 (+) 294 WP_006269989.1 competence type IV pilus minor pilin ComGE Machinery gene
  DEH83_RS05600 (DEH83_05585) comGF/cglF 1092133..1092570 (+) 438 WP_049476068.1 competence type IV pilus minor pilin ComGF Machinery gene
  DEH83_RS05605 (DEH83_05590) comGG 1092551..1092877 (+) 327 WP_003070783.1 competence type IV pilus minor pilin ComGG -
  DEH83_RS05610 (DEH83_05595) comYH 1092962..1093915 (+) 954 WP_255776368.1 class I SAM-dependent methyltransferase Machinery gene
  DEH83_RS05615 (DEH83_05600) - 1093962..1095161 (+) 1200 WP_255776369.1 acetate kinase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38865.09 Da        Isoelectric Point: 9.7531

>NTDB_id=291187 DEH83_RS05580 WP_255777234.1 1090160..1091182(+) (comYB) [Streptococcus constellatus strain TCV107]
MQQDISLLSRQKRKKLSIVRQKKVVELLNNLFSSGFHLAEMIDFLKRSALLEKTYVEKMKEGLATGKPFSGIMASLGFSD
SVVTQLSLAELHGNLSLSLTKIEEYLENVSKVKKKLIEVATYPFILLIFLVFIMLGLRNYLLPQLERQNSATQLISQLPQ
IFLGSLGVVLVLLAIGFYWFRKSSKIVVFSFLARLPFCGTFIQAYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLIIEYGEVKSKLGCELEVYAQKTWEKFFSRINQAMNLVQPLVFVFVALV
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=291187 DEH83_RS05580 WP_255777234.1 1090160..1091182(+) (comYB) [Streptococcus constellatus strain TCV107]
ATGCAGCAGGACATATCACTTTTGAGCAGGCAGAAACGGAAAAAATTATCCATAGTTAGGCAGAAAAAAGTCGTAGAGTT
GCTGAATAATCTTTTTTCTAGCGGCTTTCATTTAGCAGAAATGATTGATTTTTTGAAGCGGAGTGCCCTGCTAGAAAAAA
CCTATGTAGAAAAGATGAAAGAGGGTTTAGCAACAGGAAAACCTTTTTCAGGAATTATGGCTAGTTTAGGATTTTCAGAT
AGTGTTGTCACCCAGCTTTCACTGGCAGAGCTACATGGGAATCTCTCACTCAGCCTGACTAAGATTGAGGAATACTTGGA
AAATGTCTCAAAAGTCAAGAAAAAGTTAATTGAGGTAGCCACTTATCCATTCATTTTACTTATTTTTTTAGTATTCATTA
TGTTAGGGCTGCGCAATTATTTACTTCCGCAGTTAGAGCGCCAAAATAGTGCAACGCAGCTGATTAGTCAGTTGCCGCAA
ATTTTTCTGGGTTCATTAGGAGTAGTGCTTGTTTTGTTAGCGATAGGTTTTTATTGGTTTAGAAAAAGCTCAAAAATAGT
AGTGTTTAGCTTTTTGGCTCGACTTCCTTTTTGTGGAACTTTTATTCAAGCGTATTTGACAGCTTATTATGCGCGCGAAT
GGGGAAATATGATTGGTCAAGGTTTAGAACTCAGTCAGATTTTTCAGATGATGCAAGGGCAACGCTCTGCTATGTTTCAA
GAAATTGGAAAAGACTTAGAAGTTGCGCTGCAAAATGGTCAGGAATTTTCCCAAGTGGTTAAACACTACCCGTTTTTTAA
AAAGGAATTGGGTTTGATAATTGAATACGGTGAAGTGAAATCCAAATTAGGGTGTGAATTAGAAGTTTATGCTCAAAAAA
CGTGGGAGAAGTTTTTTAGTCGGATCAATCAGGCTATGAACTTAGTGCAGCCGCTTGTCTTTGTTTTTGTGGCACTGGTT
ATTGTTTTATTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.235

100

0.732
  comGB/cglB Streptococcus mitis NCTC 12261

69.822

99.412

0.694
  comGB/cglB Streptococcus mitis SK321

68.452

98.824

0.676
  comGB/cglB Streptococcus pneumoniae TIGR4

68.155

98.824

0.674
  comGB/cglB Streptococcus pneumoniae R6

68.155

98.824

0.674
  comGB/cglB Streptococcus pneumoniae Rx1

68.155

98.824

0.674
  comGB/cglB Streptococcus pneumoniae D39

68.155

98.824

0.674
  comYB Streptococcus mutans UA159

61.988

100

0.624
  comYB Streptococcus mutans UA140

61.696

100

0.621
  comGB Lactococcus lactis subsp. cremoris KW2

52.226

99.118

0.518

Multiple sequence alignment