Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   DEH83_RS05595 Genome accession   NZ_CP029207
Coordinates   1091856..1092149 (+) Length   97 a.a.
NCBI ID   WP_006269989.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086856..1097149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS05560 (DEH83_05545) - 1086910..1087269 (+) 360 WP_003070793.1 MerR family transcriptional regulator -
  DEH83_RS05565 (DEH83_05550) glnA 1087308..1088654 (+) 1347 WP_006269977.1 type I glutamate--ammonia ligase -
  DEH83_RS05570 (DEH83_05555) - 1088842..1089207 (+) 366 WP_255776366.1 DUF1033 family protein -
  DEH83_RS05575 (DEH83_05560) comYA 1089277..1090218 (+) 942 WP_219123646.1 competence type IV pilus ATPase ComGA Machinery gene
  DEH83_RS05580 (DEH83_05565) comYB 1090160..1091182 (+) 1023 WP_255777234.1 competence type IV pilus assembly protein ComGB Machinery gene
  DEH83_RS05585 (DEH83_05570) comYC 1091179..1091496 (+) 318 WP_006269985.1 competence type IV pilus major pilin ComGC Machinery gene
  DEH83_RS05590 (DEH83_05575) comYD 1091456..1091884 (+) 429 WP_255776367.1 competence type IV pilus minor pilin ComGD Machinery gene
  DEH83_RS05595 (DEH83_05580) comGE/cglE 1091856..1092149 (+) 294 WP_006269989.1 competence type IV pilus minor pilin ComGE Machinery gene
  DEH83_RS05600 (DEH83_05585) comGF/cglF 1092133..1092570 (+) 438 WP_049476068.1 competence type IV pilus minor pilin ComGF Machinery gene
  DEH83_RS05605 (DEH83_05590) comGG 1092551..1092877 (+) 327 WP_003070783.1 competence type IV pilus minor pilin ComGG -
  DEH83_RS05610 (DEH83_05595) comYH 1092962..1093915 (+) 954 WP_255776368.1 class I SAM-dependent methyltransferase Machinery gene
  DEH83_RS05615 (DEH83_05600) - 1093962..1095161 (+) 1200 WP_255776369.1 acetate kinase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10903.84 Da        Isoelectric Point: 9.8363

>NTDB_id=291190 DEH83_RS05595 WP_006269989.1 1091856..1092149(+) (comGE/cglE) [Streptococcus constellatus strain TCV107]
MENLRKQCVRGTILLEALLALAVFAFIVTLLLGQIHQSRQTENDLLKKEEVLRVANMALQTKQSHLTINGIEVRVEKSQQ
GIQIYHGKELIVGVQGK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=291190 DEH83_RS05595 WP_006269989.1 1091856..1092149(+) (comGE/cglE) [Streptococcus constellatus strain TCV107]
ATGGAAAATTTAAGAAAACAATGCGTTAGAGGAACGATTTTATTAGAAGCTTTATTGGCATTGGCTGTTTTTGCGTTTAT
TGTGACCTTGTTATTGGGGCAGATCCATCAGTCTCGACAGACAGAAAATGATTTACTAAAAAAAGAAGAAGTTCTAAGAG
TGGCTAATATGGCATTACAAACAAAGCAAAGCCATTTAACAATAAACGGTATTGAAGTTCGTGTTGAAAAAAGTCAACAA
GGCATCCAGATTTATCATGGGAAGGAGCTGATTGTCGGTGTTCAAGGCAAATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

56.522

94.845

0.536
  comGE/cglE Streptococcus pneumoniae D39

56.522

94.845

0.536
  comGE/cglE Streptococcus pneumoniae R6

56.522

94.845

0.536
  comGE/cglE Streptococcus pneumoniae TIGR4

56.522

94.845

0.536
  comGE/cglE Streptococcus mitis NCTC 12261

55.435

94.845

0.526
  comGE/cglE Streptococcus mitis SK321

55.435

94.845

0.526
  comYE Streptococcus mutans UA140

43.434

100

0.443
  comYE Streptococcus mutans UA159

43.434

100

0.443

Multiple sequence alignment