Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DEH83_RS05610 | Genome accession | NZ_CP029207 |
| Coordinates | 1092962..1093915 (+) | Length | 317 a.a. |
| NCBI ID | WP_255776368.1 | Uniprot ID | - |
| Organism | Streptococcus constellatus strain TCV107 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1087962..1098915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEH83_RS05570 (DEH83_05555) | - | 1088842..1089207 (+) | 366 | WP_255776366.1 | DUF1033 family protein | - |
| DEH83_RS05575 (DEH83_05560) | comYA | 1089277..1090218 (+) | 942 | WP_219123646.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DEH83_RS05580 (DEH83_05565) | comYB | 1090160..1091182 (+) | 1023 | WP_255777234.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DEH83_RS05585 (DEH83_05570) | comYC | 1091179..1091496 (+) | 318 | WP_006269985.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DEH83_RS05590 (DEH83_05575) | comYD | 1091456..1091884 (+) | 429 | WP_255776367.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DEH83_RS05595 (DEH83_05580) | comGE/cglE | 1091856..1092149 (+) | 294 | WP_006269989.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DEH83_RS05600 (DEH83_05585) | comGF/cglF | 1092133..1092570 (+) | 438 | WP_049476068.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DEH83_RS05605 (DEH83_05590) | comGG | 1092551..1092877 (+) | 327 | WP_003070783.1 | competence type IV pilus minor pilin ComGG | - |
| DEH83_RS05610 (DEH83_05595) | comYH | 1092962..1093915 (+) | 954 | WP_255776368.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DEH83_RS05615 (DEH83_05600) | - | 1093962..1095161 (+) | 1200 | WP_255776369.1 | acetate kinase | - |
| DEH83_RS05620 (DEH83_05605) | glmS | 1095552..1097366 (+) | 1815 | WP_255776370.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36008.77 Da Isoelectric Point: 4.2821
>NTDB_id=291192 DEH83_RS05610 WP_255776368.1 1092962..1093915(+) (comYH) [Streptococcus constellatus strain TCV107]
MNFEKIEQAYSLLLENVQELQNTLLTNFYDALVEQNGVYLDGNTELAIVKKNNETLKSLKLDKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDFIGFILTFLIDQLSNKEHIDVLEIGSGMGNLAETILNNTNKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDNIATRYEVASRQEHTYAHHLLMEQSLKYLKSDGYAIFLAPNDLLTSTQ
SDLLKNWLQKHAQIVAMIALPESLFGNAAYAKTIFVLKKQDEQTVQPFVYALSDLQNQADLLTFSEKFQNWSQESEI
MNFEKIEQAYSLLLENVQELQNTLLTNFYDALVEQNGVYLDGNTELAIVKKNNETLKSLKLDKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDFIGFILTFLIDQLSNKEHIDVLEIGSGMGNLAETILNNTNKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDNIATRYEVASRQEHTYAHHLLMEQSLKYLKSDGYAIFLAPNDLLTSTQ
SDLLKNWLQKHAQIVAMIALPESLFGNAAYAKTIFVLKKQDEQTVQPFVYALSDLQNQADLLTFSEKFQNWSQESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=291192 DEH83_RS05610 WP_255776368.1 1092962..1093915(+) (comYH) [Streptococcus constellatus strain TCV107]
ATGAATTTTGAAAAAATAGAACAGGCTTATTCGCTTTTGTTAGAAAATGTCCAGGAGCTCCAAAACACTCTTTTGACGAA
TTTTTATGATGCTTTGGTCGAGCAAAATGGGGTTTATCTGGATGGAAATACAGAGCTAGCTATTGTCAAAAAAAATAATG
AAACACTTAAATCTTTGAAATTAGATAAAGAAGAATGGCGACGAGCGTACCAATTTTTGCTGATGAAAGCGGCTCAAACA
GAGCCTTTGCAAGCTAATCACCAATTTACTCCAGATTTTATCGGGTTTATCCTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTGTTGGAAATTGGTAGTGGAATGGGAAATTTGGCAGAAACCATTCTTAATAATACAAATAAAA
ACGTGGATTATCTAGGACTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGATGCAAAA
GTTAGTTTTGTGCAAGGTGATGCGGTGCGCCCGCAAGTATTGAAAGAAAGCGATGTGATTATCAGTGATTTACCAGTTGG
CTTTTATCCTGATGATAACATTGCGACGCGCTATGAAGTAGCTAGTAGACAGGAGCATACTTATGCTCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTCAAATCGGATGGTTATGCTATTTTCCTTGCACCAAATGATTTACTGACTAGCACACAA
AGTGATTTATTAAAAAATTGGTTGCAGAAGCATGCACAAATAGTTGCAATGATTGCGTTACCAGAGTCTCTTTTTGGAAA
TGCAGCATACGCTAAAACAATTTTTGTACTGAAAAAGCAAGATGAACAAACTGTCCAACCATTTGTTTATGCTTTATCTG
ATTTGCAGAATCAAGCGGATTTATTGACATTTAGCGAAAAGTTTCAAAATTGGAGCCAAGAAAGTGAAATTTAA
ATGAATTTTGAAAAAATAGAACAGGCTTATTCGCTTTTGTTAGAAAATGTCCAGGAGCTCCAAAACACTCTTTTGACGAA
TTTTTATGATGCTTTGGTCGAGCAAAATGGGGTTTATCTGGATGGAAATACAGAGCTAGCTATTGTCAAAAAAAATAATG
AAACACTTAAATCTTTGAAATTAGATAAAGAAGAATGGCGACGAGCGTACCAATTTTTGCTGATGAAAGCGGCTCAAACA
GAGCCTTTGCAAGCTAATCACCAATTTACTCCAGATTTTATCGGGTTTATCCTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTGTTGGAAATTGGTAGTGGAATGGGAAATTTGGCAGAAACCATTCTTAATAATACAAATAAAA
ACGTGGATTATCTAGGACTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGATGCAAAA
GTTAGTTTTGTGCAAGGTGATGCGGTGCGCCCGCAAGTATTGAAAGAAAGCGATGTGATTATCAGTGATTTACCAGTTGG
CTTTTATCCTGATGATAACATTGCGACGCGCTATGAAGTAGCTAGTAGACAGGAGCATACTTATGCTCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTCAAATCGGATGGTTATGCTATTTTCCTTGCACCAAATGATTTACTGACTAGCACACAA
AGTGATTTATTAAAAAATTGGTTGCAGAAGCATGCACAAATAGTTGCAATGATTGCGTTACCAGAGTCTCTTTTTGGAAA
TGCAGCATACGCTAAAACAATTTTTGTACTGAAAAAGCAAGATGAACAAACTGTCCAACCATTTGTTTATGCTTTATCTG
ATTTGCAGAATCAAGCGGATTTATTGACATTTAGCGAAAAGTTTCAAAATTGGAGCCAAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.635 |
99.369 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.317 |
99.369 |
0.599 |