Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DDD63_RS05440 Genome accession   NZ_CP029033
Coordinates   1262637..1262990 (+) Length   117 a.a.
NCBI ID   WP_346426245.1    Uniprot ID   -
Organism   Actinobaculum sp. 313     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1257637..1267990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDD63_RS05430 (DDD63_05430) - 1257951..1258391 (-) 441 WP_108715511.1 HIT family protein -
  DDD63_RS05435 (DDD63_05435) - 1258592..1261524 (+) 2933 Protein_1092 class I tRNA ligase family protein -
  DDD63_RS05440 (DDD63_05440) comEA 1262637..1262990 (+) 354 WP_346426245.1 helix-hairpin-helix domain-containing protein Machinery gene
  DDD63_RS05445 (DDD63_05445) - 1263018..1265423 (+) 2406 WP_108715513.1 ComEC/Rec2 family competence protein -
  DDD63_RS05450 (DDD63_05450) holA 1265496..1266494 (+) 999 WP_108716665.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 11774.01 Da        Isoelectric Point: 3.9481

>NTDB_id=289471 DDD63_RS05440 WP_346426245.1 1262637..1262990(+) (comEA) [Actinobaculum sp. 313]
MAGGMTQDADQAAINLAAPIRDGDHVHIAAVGETSVPAAGGSGEQIQSGQAGGSGLVNINTATASELQELPGIGPVLADA
IVAWREENGGFSAPEELMEVSGIGQATFEKLRDHVVV

Nucleotide


Download         Length: 354 bp        

>NTDB_id=289471 DDD63_RS05440 WP_346426245.1 1262637..1262990(+) (comEA) [Actinobaculum sp. 313]
ATGGCCGGCGGGATGACACAGGATGCGGACCAAGCGGCCATCAACCTGGCGGCGCCGATCAGGGACGGGGACCACGTACA
TATTGCCGCCGTCGGAGAGACGTCTGTTCCGGCTGCGGGTGGTTCCGGGGAACAGATACAGTCCGGGCAGGCGGGTGGGT
CCGGTCTGGTCAATATCAACACGGCCACTGCGTCTGAGTTGCAGGAATTGCCGGGGATTGGCCCGGTGCTGGCCGATGCG
ATTGTGGCATGGAGGGAAGAAAACGGCGGTTTCTCGGCCCCGGAGGAACTCATGGAGGTTTCGGGAATCGGCCAAGCCAC
CTTTGAGAAGTTACGTGATCACGTGGTGGTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(56-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  comEA Lactococcus lactis subsp. cremoris KW2

40.984

100

0.427
  comEA Streptococcus thermophilus LMD-9

42.017

100

0.427
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.655

99.145

0.393
  comEA/celA/cilE Streptococcus pneumoniae D39

38.793

99.145

0.385
  comEA/celA/cilE Streptococcus mitis SK321

38.793

99.145

0.385
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.793

99.145

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

38.793

99.145

0.385
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.931

99.145

0.376
  comEA Latilactobacillus sakei subsp. sakei 23K

32.09

100

0.368

Multiple sequence alignment