Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7T95_RS01945 Genome accession   NZ_CP028730
Coordinates   472693..473961 (-) Length   422 a.a.
NCBI ID   WP_107946383.1    Uniprot ID   -
Organism   Shewanella baltica strain 128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467693..478961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7T95_RS01920 yacG 468130..468339 (-) 210 WP_107946379.1 DNA gyrase inhibitor YacG -
  C7T95_RS01925 zapD 468413..469147 (-) 735 WP_107946380.1 cell division protein ZapD -
  C7T95_RS01930 coaE 469140..469757 (-) 618 WP_063884698.1 dephospho-CoA kinase -
  C7T95_RS01935 - 469759..471714 (-) 1956 WP_107946381.1 LTA synthase family protein -
  C7T95_RS01940 pilD 471731..472660 (-) 930 WP_107946382.1 prepilin peptidase Machinery gene
  C7T95_RS01945 pilC 472693..473961 (-) 1269 WP_107946383.1 type II secretion system F family protein Machinery gene
  C7T95_RS01950 pilB 474099..475811 (-) 1713 WP_107946384.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C7T95_RS01955 - 475883..476308 (-) 426 WP_107946385.1 type IV pilin protein -
  C7T95_RS01960 nadC 477017..477898 (-) 882 WP_107946386.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C7T95_RS01965 ampD 478170..478733 (+) 564 WP_107946387.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46097.31 Da        Isoelectric Point: 10.2290

>NTDB_id=286815 C7T95_RS01945 WP_107946383.1 472693..473961(-) (pilC) [Shewanella baltica strain 128]
MATATTTRKSRTKKAEQKSQPKIYTFEWKGLNRDGKKTAGELRGASAAEIRSQLKSQGVNPKSVRKQSSALFKLGDPKIT
PMDIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVAVLVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=286815 C7T95_RS01945 WP_107946383.1 472693..473961(-) (pilC) [Shewanella baltica strain 128]
ATGGCTACGGCAACGACCACAAGAAAGTCTCGTACTAAGAAAGCCGAGCAAAAGAGCCAACCAAAAATCTATACCTTTGA
ATGGAAAGGCCTAAATCGCGACGGTAAGAAGACTGCAGGTGAACTCAGGGGCGCATCTGCCGCCGAAATCCGTAGTCAGT
TAAAATCCCAAGGGGTGAACCCGAAGAGCGTACGTAAACAGTCATCTGCGCTATTTAAACTAGGTGATCCGAAAATCACC
CCTATGGATATTGCTATGATGACTCGCCAAATCGCGACTATGTTAGCGGCGGGCGTACCTTTAGTCACCACAATTGAACT
ACTCGGCCGCGGTCACGAAAAAGCTAAGATGCGAGAACTTTTAGGAAATATTCTCAGCGAAATTCAATCGGGTATTCCTT
TATCCGATGCTATGCGTCCCCATAGGCGTTACTTCGATGAACTTTATGTTGACCTAGTTGCAGCCGGTGAGCACTCAGGT
TCACTCGATTTGGTTTTCGATCGCGTCGCAACCTATAGAGAAAAAACGGAAGCGCTCAAATCAAAAATTAAAAAAGCCAT
GTTCTATCCGGCTGCTGTTGTCATAGTAGCTGTTTTAGTAACAACTTTATTACTGCTGTTTGTCGTGCCTCAATTCGAAG
AAATATTTAAAGGCTTCGGTGCTGAATTGCCCGCCTTTACTCAATTAGTGCTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTACATCTTTCTAGCCGCCATTGTTGGCGGAGTATTTTTGTTTGTGCGGGCGCACCGAAACTCACAAATGGTGCGAGA
TAGAGTAGACGAAGCTGTGCTTAAAATCCCAGCCATTGGACCTATTTTACACAAAGGGGCCATGGCTCGATTCGCTCGTA
CTTTAGCTACTACCTTCGCCGCGGGTGTGCCACTCATTGATGGCTTAGAATCCGCAGCTGGCGCATCAGGTAATGCGGTA
TACCGCAAAGCGATTTTAAAAATTCGTCAAGAAGTGATGGCGGGGATGCAGATGAATGTGGCTATGCAGACCACTGGGCT
TTTCCCCGACATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCAGGTTCACTGGATAACATGCTCAATAAAGTCTCAA
CCATCTACGAAATGCAAGTAGACGATGCGGTTGATGGTTTATCAAGCCTAATTGAACCTATTATGATGGTAGTCATAGGC
ACAGTGGTCGGCGGGTTAATTGTCGCTATGTATCTTCCTATCTTCCAAATGGGTAAAATCGTCAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

93.839

0.524
  pilC Legionella pneumophila strain ERS1305867

49.257

95.735

0.472
  pilC Acinetobacter baumannii D1279779

48.995

94.313

0.462
  pilC Acinetobacter baylyi ADP1

48.363

94.076

0.455
  pilC Vibrio cholerae strain A1552

47.462

93.365

0.443
  pilC Vibrio campbellii strain DS40M4

44.527

95.261

0.424
  pilG Neisseria meningitidis 44/76-A

41.439

95.498

0.396
  pilG Neisseria gonorrhoeae MS11

41.439

95.498

0.396

Multiple sequence alignment