Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C7T95_RS01940 Genome accession   NZ_CP028730
Coordinates   471731..472660 (-) Length   309 a.a.
NCBI ID   WP_107946382.1    Uniprot ID   -
Organism   Shewanella baltica strain 128     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466731..477660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7T95_RS01910 - 466894..467430 (-) 537 WP_107946377.1 thioredoxin family protein -
  C7T95_RS01915 mutT 467661..468053 (-) 393 WP_107946378.1 8-oxo-dGTP diphosphatase MutT -
  C7T95_RS01920 yacG 468130..468339 (-) 210 WP_107946379.1 DNA gyrase inhibitor YacG -
  C7T95_RS01925 zapD 468413..469147 (-) 735 WP_107946380.1 cell division protein ZapD -
  C7T95_RS01930 coaE 469140..469757 (-) 618 WP_063884698.1 dephospho-CoA kinase -
  C7T95_RS01935 - 469759..471714 (-) 1956 WP_107946381.1 LTA synthase family protein -
  C7T95_RS01940 pilD 471731..472660 (-) 930 WP_107946382.1 prepilin peptidase Machinery gene
  C7T95_RS01945 pilC 472693..473961 (-) 1269 WP_107946383.1 type II secretion system F family protein Machinery gene
  C7T95_RS01950 pilB 474099..475811 (-) 1713 WP_107946384.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C7T95_RS01955 - 475883..476308 (-) 426 WP_107946385.1 type IV pilin protein -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 34491.01 Da        Isoelectric Point: 7.3455

>NTDB_id=286814 C7T95_RS01940 WP_107946382.1 471731..472660(-) (pilD) [Shewanella baltica strain 128]
MSEFISLLSQSLDQNPWLFVALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDTVKKIGVDQLNKPIDAF
PEKYNLVVPGSACPKCKTAIKPWHNLPVLGWLMLKGKCASCHAPISARYPIIEFITGLLIATLAWHFGPSWQFVFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
LGAWLGWQMVPLVILLSSLVGAAVGITMIIMKRLRQNTPIPFGPYLAAAGWIALILGNSITEFYILNFL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=286814 C7T95_RS01940 WP_107946382.1 471731..472660(-) (pilD) [Shewanella baltica strain 128]
ATGTCAGAATTCATCTCCCTTTTAAGCCAGTCTCTAGATCAGAATCCTTGGCTGTTTGTTGCGTTAAGCTTTATTTTTGC
CGCTACCATTGGTAGTTTTTTAAACGTGGTGATCCACAGATTTCCAGTGATGATGAAAAGGGAGTGGCAGCAAGAATGTA
ATCAGTATTTGCAGGAATATCACGAAGACACAGTCAAAAAAATAGGGGTAGACCAACTCAATAAACCTATAGATGCCTTT
CCTGAAAAGTATAATCTTGTTGTGCCGGGCTCAGCCTGCCCTAAATGTAAAACCGCGATTAAACCTTGGCATAATTTGCC
TGTATTAGGCTGGTTAATGCTCAAAGGTAAATGCGCCTCCTGTCACGCCCCTATTTCTGCCCGCTACCCCATTATTGAAT
TCATCACAGGGCTACTTATCGCGACTTTAGCTTGGCACTTTGGTCCAAGCTGGCAGTTTGTTTTTGCAAGCATACTCACC
TTTGTGCTTGTAGCACTGACGGGTATCGATCTTGATGAGATGTTACTCCCCGACCAAATGACATTGCCGTTACTTTGGCT
CGGCTTGATCATCAATCTAAATCATACCTTTGCGAGCCCAACCGATGCCATTATCGGTGCGGCAGCAGGCTATTTAAGCT
TGTGGTCTATTTTTTGGCTATTTAAAATTCTCACAGGCAAGGAAGGCATGGGCTATGGCGACTTTAAATTACTCGCCGTA
CTCGGTGCTTGGCTAGGCTGGCAAATGGTGCCGCTAGTAATTTTACTTTCATCATTAGTGGGAGCAGCGGTTGGTATTAC
AATGATTATTATGAAACGTCTCAGGCAAAATACCCCAATTCCGTTTGGACCTTATCTCGCAGCGGCAGGTTGGATCGCAT
TAATACTAGGAAATAGTATAACTGAGTTTTATATATTAAATTTTTTATAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-147)

Type IV leader peptidase family (Peptidase_A24)

(158-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

50.508

95.469

0.482
  pilD Vibrio cholerae strain A1552

50.685

94.498

0.479
  pilD Acinetobacter baumannii D1279779

46.885

98.706

0.463
  pilD Acinetobacter nosocomialis M2

46.885

98.706

0.463
  pilD Neisseria gonorrhoeae MS11

45.035

91.262

0.411

Multiple sequence alignment