Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDG55_RS13410 Genome accession   NZ_CP028561
Coordinates   2498344..2499570 (+) Length   408 a.a.
NCBI ID   WP_087536893.1    Uniprot ID   A0A2R4TMJ1
Organism   Acinetobacter sp. WCHA45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2493344..2504570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS13375 (CDG55_13365) rimP 2493982..2494506 (-) 525 WP_087536896.1 ribosome maturation factor RimP -
  CDG55_RS13395 (CDG55_13385) secG 2495129..2495458 (-) 330 WP_005162938.1 preprotein translocase subunit SecG -
  CDG55_RS13400 (CDG55_13390) tpiA 2495471..2496262 (-) 792 WP_087536895.1 triose-phosphate isomerase -
  CDG55_RS13405 (CDG55_13395) pilB 2496605..2498320 (+) 1716 WP_087536894.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDG55_RS13410 (CDG55_13400) pilC 2498344..2499570 (+) 1227 WP_087536893.1 type II secretion system F family protein Machinery gene
  CDG55_RS15600 (CDG55_13405) pilD 2499570..2500430 (+) 861 WP_087536892.1 prepilin peptidase Machinery gene
  CDG55_RS13420 (CDG55_13410) coaE 2500432..2501037 (+) 606 WP_087536891.1 dephospho-CoA kinase -
  CDG55_RS13425 (CDG55_13415) - 2501034..2501945 (-) 912 WP_087536890.1 DMT family transporter -
  CDG55_RS13430 (CDG55_13420) rlmB 2501976..2502725 (-) 750 WP_005162952.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CDG55_RS13435 (CDG55_13425) - 2502905..2503231 (-) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44962.48 Da        Isoelectric Point: 9.8408

>NTDB_id=285525 CDG55_RS13410 WP_087536893.1 2498344..2499570(+) (pilC) [Acinetobacter sp. WCHA45]
MAANKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGITIKNIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVIGAIIT
AFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=285525 CDG55_RS13410 WP_087536893.1 2498344..2499570(+) (pilC) [Acinetobacter sp. WCHA45]
ATGGCAGCAAATAAAGCGCAAATGATGCCTACTTTTGCTTATGAAGGGGTAGATCGCAAAGGGGCTAAAATTAAAGGGGA
GTTACCTGCACGTAATATGGCTTTAGCCAAAGTCACGTTACGAAAACAAGGAATTACCATTAAAAATATTCGAGAAAAAC
GCAAAAACATTCTCGAAGGTTTAATGAAGAAAAAAGTATCAACGCTAGATATTACGATTTTTACTCGTCAATTAGCAACC
ATGATGAAAGCAGGGGTGCCACTGGTTCAGGGCTTTGAAATTGTTGCAGAGGGCTTGGAAAACCCTGCCATGCGCGAAGT
GGTTTTAGGAATTAAGGGTGAAGTCGAAGGGGGGAATACTTTTGCTGGAGCCCTTAAGAAATATCCACAGTATTTTGACA
ACCTTTTTTGTTCTTTAGTGGAGTCAGGAGAGCAATCAGGTGCACTTGAAACCATGCTGGATCGAGTGGCGATATATAAA
GAAAAAAGTGAACTGCTTAAACAAAAAATTAAAAAAGCCATGAAATATCCAATTACAGTGATTGTGGTTGCTGTCATTGT
CACGATTATTTTAATGGTAAAAGTTGTGCCTGTTTTCCAAGATCTGTTTAGTTCCTTTGGTGCAGACCTGCCCGCTTTTA
CTAAAATGGTGGTCAATATGTCTGAGTGGATGCAAAAATATTGGTTTATCCTTATCATCGTTATTGGTGCAATTATTACC
GCTTTCCTTGAGGCAAAAAAGCGTAGTAAAAAATTTCGCGATCTTTTAGACAAAATGGCACTAAAGGCACCAATTTTCGG
TGATCTTGTTTATAAAGCAATTATTGCGCGTTACAGCCGCACGCTTGCAACTACTTTTGCAGCAGGTGTACCACTGATTG
ATGCTCTTGAATCTACAGCAGGTGCAACAAATAATGTGATTTACGAAGAAGCTGTCATGAAAATTCGTGAAGATGTTGCG
ACAGGTCAACAACTACAATTTGCAATGCGTGTTTCCAATCGCTTTCCATCTATGGCAATTCAAATGGTTGCGATCGGTGA
AGAATCTGGTGCGCTAGATAGTATGTTAGACAAAGTGGCAACACACTTTGAAAATGAAGTTGATAATGCAGTCGATGGTC
TTACTTCCATGATGGAACCATTAATTATGGCAATTTTAGGTGTACTTGTTGGTGGTCTAGTTATTGCAATGTATCTCCCA
ATTTTCCAAATGGGTTCTGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TMJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.402

100

0.924
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

60.591

99.51

0.603
  pilC Legionella pneumophila strain ERS1305867

54.271

97.549

0.529
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

41.667

100

0.417
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404

Multiple sequence alignment