Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   C9I44_RS01575 Genome accession   NZ_CP028386
Coordinates   296751..297140 (+) Length   129 a.a.
NCBI ID   WP_003133885.1    Uniprot ID   -
Organism   Lactococcus garvieae strain IBB3403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 296751..303593 296751..297140 within 0


Gene organization within MGE regions


Location: 296751..303593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS01575 (C9I44_01545) ssbB 296751..297140 (+) 390 WP_003133885.1 single-stranded DNA-binding protein Machinery gene
  C9I44_RS01580 (C9I44_01550) - 297198..297728 (+) 531 WP_003133887.1 ClbS/DfsB family four-helix bundle protein -
  C9I44_RS01585 (C9I44_01555) groES 297845..298126 (+) 282 WP_003133888.1 co-chaperone GroES -
  C9I44_RS01590 (C9I44_01560) groL 298155..299780 (+) 1626 WP_003133890.1 chaperonin GroEL -
  C9I44_RS01595 (C9I44_01565) - 299832..300644 (-) 813 WP_003133892.1 MBL fold metallo-hydrolase -
  C9I44_RS01600 (C9I44_01570) - 300641..302059 (-) 1419 WP_003133893.1 ATP-binding protein -
  C9I44_RS01605 (C9I44_01575) yycF 302052..302753 (-) 702 WP_003133894.1 response regulator YycF -
  C9I44_RS01610 (C9I44_01580) tmk 302964..303593 (+) 630 WP_003133897.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14760.93 Da        Isoelectric Point: 9.3830

>NTDB_id=284560 C9I44_RS01575 WP_003133885.1 296751..297140(+) (ssbB) [Lactococcus garvieae strain IBB3403]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSTLNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=284560 C9I44_RS01575 WP_003133885.1 296751..297140(+) (ssbB) [Lactococcus garvieae strain IBB3403]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGAGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTACGCTTAATTTAAAAGAAGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

56.589

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssbA Streptococcus mutans UA159

50

100

0.504
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

100

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372

Multiple sequence alignment