Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C9J74_RS17460 Genome accession   NZ_CP028358
Coordinates   3722944..3724203 (+) Length   419 a.a.
NCBI ID   WP_107380263.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain W18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3717944..3729203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J74_RS17445 pilR 3718640..3720013 (+) 1374 WP_049447478.1 sigma-54 dependent transcriptional regulator Regulator
  C9J74_RS17450 pilB 3720119..3721846 (-) 1728 WP_107380259.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C9J74_RS22620 - 3722149..3722583 (-) 435 WP_107380261.1 pilin -
  C9J74_RS17460 pilC 3722944..3724203 (+) 1260 WP_107380263.1 type II secretion system F family protein Machinery gene
  C9J74_RS17465 - 3724212..3725075 (+) 864 WP_032128827.1 A24 family peptidase -
  C9J74_RS17470 coaE 3725087..3725698 (+) 612 WP_099589894.1 dephospho-CoA kinase -
  C9J74_RS17475 - 3725999..3727327 (-) 1329 WP_080354893.1 HAMP domain-containing sensor histidine kinase -
  C9J74_RS17480 - 3727332..3728009 (-) 678 WP_005410804.1 response regulator transcription factor -
  C9J74_RS17485 - 3728018..3728491 (-) 474 WP_107380265.1 hypothetical protein -
  C9J74_RS17490 - 3728581..3729057 (-) 477 WP_049447486.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46042.60 Da        Isoelectric Point: 10.1923

>NTDB_id=284346 C9J74_RS17460 WP_107380263.1 3722944..3724203(+) (pilC) [Stenotrophomonas maltophilia strain W18]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQLAKNANMLRAELRRQGINPGQVKPKPKPLFGAAGKAVTSKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIASYKENIETLKGKIKKAMFYPAMVLVVALLVSSILLIWVVPQFEEVFKSFGADLPAFTQMVVNLSRFMVSWWWL
MLIALIGAIVGTIMFYKRSPKMQHTVDRLILKVPVLGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
GVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=284346 C9J74_RS17460 WP_107380263.1 3722944..3724203(+) (pilC) [Stenotrophomonas maltophilia strain W18]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCATCAAGATGAAGGGCGAGCAGTTAGCGAAGAACGCCAACATGCTACGTGCGGAGCTACGTAGGC
AGGGGATCAACCCGGGCCAAGTCAAGCCGAAGCCGAAGCCGCTGTTCGGCGCGGCCGGCAAGGCTGTGACGTCAAAGGAC
ATTGCGTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTACCGATCGTCTCGGCGCTGGAGATCATCGGCAG
CGGACATAAGAACCCGCGCATGAAGAAGATGGTGGATGGGATACGCACCGATATCGAGGGCGGTTCCTCTCTGCATGAAG
CCATCAGCAAGCATCCTGTGCAGTTCGACGAGCTCTACCGCAACCTGGTGCGTGCTGGTGAAGGGGCGGGCGTGCTGGAG
ACCGTACTCGAGACCATCGCATCCTATAAAGAGAACATCGAAACTCTTAAGGGCAAAATCAAGAAGGCAATGTTCTACCC
AGCCATGGTGCTGGTGGTAGCTCTCCTGGTCAGCTCAATCCTTCTCATCTGGGTGGTGCCGCAGTTCGAGGAAGTCTTCA
AGAGCTTTGGCGCAGATCTGCCGGCGTTCACCCAAATGGTGGTGAACCTGTCCAGGTTCATGGTGAGCTGGTGGTGGCTG
ATGCTCATTGCCCTCATTGGCGCAATCGTTGGCACCATCATGTTCTACAAGCGCTCTCCGAAGATGCAGCATACGGTCGA
CCGGCTGATCCTGAAGGTGCCAGTACTTGGCCAGATCATGCACAACAGCTCGATCGCCCGCTTCGCCCGCACCACGGCAG
TCACCTTCAAGGCTGGCGTGCCACTGGTGGAGGCACTTGGCATCGTGGCCGGCGCCACCGGTAACAAGGTCTATGAGGAA
GGCGTACTCCGAATGAGGGACGATGTCTCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAACTCGGTGGATGCCCTGAGCAGCCTGCTGGAGCCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.525

94.511

0.496
  pilC Legionella pneumophila strain ERS1305867

51.629

95.227

0.492
  pilC Acinetobacter baylyi ADP1

50.246

96.897

0.487
  pilC Acinetobacter baumannii D1279779

51.134

94.749

0.484
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

40.399

95.704

0.387

Multiple sequence alignment