Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   C9J74_RS17450 Genome accession   NZ_CP028358
Coordinates   3720119..3721846 (-) Length   575 a.a.
NCBI ID   WP_107380259.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain W18     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3715119..3726846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J74_RS17435 sucC 3715391..3716560 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  C9J74_RS17440 - 3716966..3718579 (+) 1614 WP_049447477.1 ATP-binding protein -
  C9J74_RS17445 pilR 3718640..3720013 (+) 1374 WP_049447478.1 sigma-54 dependent transcriptional regulator Regulator
  C9J74_RS17450 pilB 3720119..3721846 (-) 1728 WP_107380259.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C9J74_RS22620 - 3722149..3722583 (-) 435 WP_107380261.1 pilin -
  C9J74_RS17460 pilC 3722944..3724203 (+) 1260 WP_107380263.1 type II secretion system F family protein Machinery gene
  C9J74_RS17465 - 3724212..3725075 (+) 864 WP_032128827.1 A24 family peptidase -
  C9J74_RS17470 coaE 3725087..3725698 (+) 612 WP_099589894.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62243.22 Da        Isoelectric Point: 5.8743

>NTDB_id=284345 C9J74_RS17450 WP_107380259.1 3720119..3721846(-) (pilB) [Stenotrophomonas maltophilia strain W18]
MSTVTTANLVGITGLARRLVQDGALDEATARDAMARAAAARQPLPTWFAQNKLVSASQLAAANAVEFGMPLFDVSTFDAS
QNAMSLVSEELLRKHNLLPLFKRGGKLFVGTSNPTHALDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTIGDALGGD
DEGMANLDVGLGDEDNAGGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLFL
EAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCGNCKRPANLPEHA
LLAEGFTQAQLDAGIELYEAVGCDECTEGYKGRTGLYQVMPMTDEIATIVLAGGNALQIAEAAQQIGVNDLRQSALKKAA
AGVTSLAEINRVTKD

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=284345 C9J74_RS17450 WP_107380259.1 3720119..3721846(-) (pilB) [Stenotrophomonas maltophilia strain W18]
ATGAGTACCGTAACCACCGCCAACCTCGTCGGCATCACCGGCCTGGCCCGCCGCCTGGTCCAGGACGGCGCCCTCGACGA
GGCTACCGCCCGCGACGCGATGGCCAGGGCCGCCGCCGCCCGCCAGCCGCTGCCTACCTGGTTCGCCCAGAACAAGCTGG
TCAGCGCCTCGCAGCTCGCGGCCGCCAACGCTGTCGAATTCGGCATGCCGCTGTTCGACGTGTCCACGTTCGACGCCAGC
CAGAATGCGATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAACTTGCTGCCGCTGTTCAAACGCGGCGGCAAGCT
GTTCGTGGGTACCAGCAATCCGACCCATGCGCTGGACGAGATCAAGTTCCACACCAATCTGGTAGTGGAACCGATCCTGG
TTGATGAAGACCAGATCCGCCGGACGCTGGAGCAGTGGCACGCCAGCCACGACACCATCGGCGACGCGCTCGGTGGCGAT
GACGAGGGTATGGCCAACCTCGATGTCGGGTTGGGTGACGAGGACAATGCCGGTGGCGACTCCGGCATCGACGCCAAGGG
TGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGACGCGATCCGCAAGGGCGCATCGGACATCCACTTCG
AACCCTACGAAGACGATTACCGCGTGCGCCTGCGCATCGACGGCTTGCTGAAGATGGTGGCGCGCGCGCCAGTGAAGTTG
AACCAACGCATTGCCGCGCGCCTGAAGGTGATGGCGCAGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGACGGTCGCAT
CAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACGCTACCGACCCTGTTCGGCGAGAAGGTGGTGC
TGCGTATCCTCGATGGCAGCGCGGCCAAGCTGGGTATCGACAAGCTGGGCTACGAGCCGGACCAGCAGAAGCTGTTCCTG
GAGGCCATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACGGTGTCGCTGTACACGGC
GCTGGGCATCCTCAACGATGAGACGCGCAACATCTCCACCGCCGAAGACCCGGTGGAAATTCGTCTGCCCGGCGTCAATC
AGGTACAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGCTCGTTCCTGCGACAGGATCCGGACATCATC
ATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCACATGGTGCTGTCCAC
GCTGCATACCAATGATGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCACCAGCTCGG
TGACGCTGGTGATCGCGCAGCGCCTGGCGCGCCGGCTGTGCGGCAACTGCAAGCGTCCGGCGAATCTGCCGGAGCATGCG
CTGCTGGCCGAAGGCTTCACCCAGGCGCAGCTGGACGCAGGCATTGAGCTGTACGAGGCGGTGGGGTGCGATGAGTGCAC
TGAGGGCTACAAGGGCCGTACCGGTCTCTACCAGGTGATGCCGATGACCGATGAGATCGCTACGATCGTGCTGGCCGGTG
GCAATGCACTGCAGATTGCCGAGGCGGCGCAGCAGATCGGGGTGAATGACCTGCGGCAGTCGGCGTTGAAGAAGGCGGCG
GCGGGTGTGACCAGCCTGGCCGAGATCAATCGCGTTACCAAGGATTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-149)

Type II/IV secretion system protein (T2SSE)

(198-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.966

98.609

0.562
  pilB Acinetobacter baylyi ADP1

55.709

100

0.56
  pilB Legionella pneumophila strain ERS1305867

51.839

99.304

0.515
  pilF Neisseria gonorrhoeae MS11

49.12

98.783

0.485
  pilB Vibrio cholerae strain A1552

49.117

98.435

0.483
  pilB Vibrio parahaemolyticus RIMD 2210633

45.884

99.304

0.456
  pilB Vibrio campbellii strain DS40M4

44.64

98.957

0.442

Multiple sequence alignment