Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C8I07_RS05825 Genome accession   NZ_CP028355
Coordinates   1356467..1357732 (+) Length   421 a.a.
NCBI ID   WP_107402782.1    Uniprot ID   -
Organism   Shewanella baltica strain CW2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351467..1362732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8I07_RS05810 (C8I07_05790) nadC 1352521..1353402 (+) 882 WP_107402780.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C8I07_RS05815 (C8I07_05795) - 1354124..1354570 (+) 447 WP_310795220.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C8I07_RS05820 (C8I07_05800) pilB 1354631..1356343 (+) 1713 WP_107402781.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C8I07_RS05825 (C8I07_05805) pilC 1356467..1357732 (+) 1266 WP_107402782.1 type II secretion system F family protein Machinery gene
  C8I07_RS05830 (C8I07_05810) pilD 1357776..1358702 (+) 927 WP_107402783.1 prepilin peptidase Machinery gene
  C8I07_RS05835 (C8I07_05815) coaE 1358742..1359359 (+) 618 WP_107402784.1 dephospho-CoA kinase -
  C8I07_RS05840 (C8I07_05820) zapD 1359352..1360086 (+) 735 WP_107402785.1 cell division protein ZapD -
  C8I07_RS05845 (C8I07_05825) yacG 1360160..1360369 (+) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  C8I07_RS05850 (C8I07_05830) mutT 1360446..1360838 (+) 393 WP_107402786.1 8-oxo-dGTP diphosphatase MutT -
  C8I07_RS05855 (C8I07_05835) - 1361069..1361605 (+) 537 WP_107402787.1 thioredoxin family protein -
  C8I07_RS05860 (C8I07_05840) - 1361670..1362596 (-) 927 WP_107402788.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46466.73 Da        Isoelectric Point: 10.1516

>NTDB_id=284323 C8I07_RS05825 WP_107402782.1 1356467..1357732(+) (pilC) [Shewanella baltica strain CW2]
MATATTVKKPRANKNDKKSQPKIYTFEWKGLNRDGKKTGGELKGTTVAEIKSQLKQQGVNPKVVRKKASPLFSRNPDIKA
MDIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTVLSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEEIFSSFGAELPAFTQMIVGISRFLQSSW
YIFFFAIVISIWLFVRAHRNSQVVRDRVDELVLKIPVIGNILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTELFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=284323 C8I07_RS05825 WP_107402782.1 1356467..1357732(+) (pilC) [Shewanella baltica strain CW2]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCGCCAATAAGAACGACAAAAAGAGCCAACCTAAAATTTATACCTTCGA
ATGGAAGGGGCTCAATCGTGATGGCAAAAAAACTGGCGGAGAGTTAAAGGGGACTACCGTAGCCGAAATAAAAAGTCAGC
TTAAACAGCAAGGTGTCAACCCAAAGGTTGTCCGCAAAAAAGCCTCACCATTATTCTCACGCAATCCTGATATTAAGGCC
ATGGACATCGCCATGGTGACTCGGCAAATCGCCACTATGTTAGCCGCAGGAGTTCCTTTGGTGACAACCATAGAAATGCT
TGGTCGGGGTCACGAAAAGCAAAAAATGCGCGAACTACTCGGCACTGTGCTATCAGAAATTCAATCGGGCATTCCACTTT
CAGACTCGCTACGTCCTCATAGACGTTACTTCGATGACTTATATGTTGACCTTGTTGCGGCAGGGGAGCATTCAGGCTCG
CTCGATGCGGTATTCGATCGTATTGCCACTTATAGGGAAAAAGCCGAGCAGCTGAAATCTAAGATTAAAAAAGCCATGTT
TTATCCCGCTGCTGTAGTCGTTGTCGCAATTTTAGTAACCACATTACTACTCCTCTTTGTGGTGCCACAATTCGAAGAGA
TTTTTAGTAGCTTTGGTGCAGAGCTCCCAGCTTTTACCCAAATGATCGTCGGTATTTCACGTTTTTTACAAAGTTCTTGG
TATATTTTCTTTTTTGCCATTGTCATCAGTATTTGGTTATTTGTACGAGCCCACCGTAACTCACAAGTCGTTCGGGATAG
AGTCGATGAGTTGGTGCTCAAAATTCCCGTTATCGGTAATATTTTACACAAAGCCGCCATGGCACGTTTTTCACGCACCT
TAGCCACGACATTTGCCGCAGGCGTCCCCTTAATCGATGGTATGGAATCTGCCGCTGGCGCATCGGGTAATGCGGTTTAC
CGTAAAGCCTTACTCAAAGTACGCCAAGAAGTGATGGCAGGCATGCAAATGAACGTGGCTATGCGCACCACTGAACTATT
TCCCGATATGTTGATCCAAATGGTGATGATAGGTGAAGAGTCTGGATCACTGGATAACATGCTCAATAAAGTCGCCAATA
TTTATGAAATGCAAGTGGATGATGCCGTTGATGGCTTATCAAGCCTGATAGAGCCTATTATGATGGTGGTTATCGGGACA
CTTGTAGGTGGTTTGATTGTAGGCATGTACCTACCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

93.824

0.513
  pilC Acinetobacter baumannii D1279779

50.25

95.012

0.477
  pilC Acinetobacter baylyi ADP1

50.378

94.299

0.475
  pilC Legionella pneumophila strain ERS1305867

49.257

95.962

0.473
  pilC Vibrio cholerae strain A1552

46.231

94.537

0.437
  pilC Vibrio campbellii strain DS40M4

43.171

97.387

0.42
  pilG Neisseria meningitidis 44/76-A

41.045

95.487

0.392
  pilG Neisseria gonorrhoeae MS11

41.045

95.487

0.392

Multiple sequence alignment