Detailed information NTG0284324

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C8I07_RS05830
• Genome accession: NZ_CP028355
• Coordinates: 1357776..1358702 (+)
• Length: 308 a.a.
• NCBI ID: WP_107402783.1
• Uniprot ID: -
• Organism: Shewanella baltica strain CW2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1352776..1363702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C8I07_RS05815 (C8I07_05795)	-	1354124..1354570 (+)	447	WP_310795220.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C8I07_RS05820 (C8I07_05800)	pilB	1354631..1356343 (+)	1713	WP_107402781.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C8I07_RS05825 (C8I07_05805)	pilC	1356467..1357732 (+)	1266	WP_107402782.1	type II secretion system F family protein	Machinery gene
C8I07_RS05830 (C8I07_05810)	pilD	1357776..1358702 (+)	927	WP_107402783.1	prepilin peptidase	Machinery gene
C8I07_RS05835 (C8I07_05815)	coaE	1358742..1359359 (+)	618	WP_107402784.1	dephospho-CoA kinase	-
C8I07_RS05840 (C8I07_05820)	zapD	1359352..1360086 (+)	735	WP_107402785.1	cell division protein ZapD	-
C8I07_RS05845 (C8I07_05825)	yacG	1360160..1360369 (+)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
C8I07_RS05850 (C8I07_05830)	mutT	1360446..1360838 (+)	393	WP_107402786.1	8-oxo-dGTP diphosphatase MutT	-
C8I07_RS05855 (C8I07_05835)	-	1361069..1361605 (+)	537	WP_107402787.1	thioredoxin family protein	-
C8I07_RS05860 (C8I07_05840)	-	1361670..1362596 (-)	927	WP_107402788.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34391.82 Da
• Isoelectric Point: 6.9391

>NTDB_id=284324 C8I07_RS05830 WP_107402783.1 1357776..1358702(+) (pilD) [Shewanella baltica strain CW2]
MNEFISLLGQSLDQSPWLFIALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEEIVNKIGIDQLNKPIDAF
PEKYNLVVPGSACPKCQTSIKPWHNLPILGWLMLKGKCAACRTPISARYPIIEFITGLLIATLAWHFGPSWQFVFASVLT
FVLVALAGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=284324 C8I07_RS05830 WP_107402783.1 1357776..1358702(+) (pilD) [Shewanella baltica strain CW2]
ATGAATGAATTTATCTCCCTTTTGGGCCAGTCTCTAGACCAGAGTCCTTGGCTCTTTATTGCTCTAAGCTTTATTTTTGC
CGCTACCATTGGTAGTTTTTTAAACGTGGTAATCCACAGATTTCCTGTGATGATGAAACGAGAATGGCAGCAAGAATGTA
ATCAGTATTTGCAGGAATACCACGAAGAGATAGTCAACAAGATAGGAATAGACCAACTCAATAAACCTATTGATGCCTTC
CCTGAAAAGTATAATCTTGTTGTGCCGGGCTCAGCCTGCCCTAAGTGCCAAACGTCGATTAAACCTTGGCATAATTTACC
CATATTAGGCTGGTTAATGCTCAAGGGGAAATGCGCCGCCTGTCGCACCCCTATTTCTGCCCGCTACCCCATTATTGAAT
TCATCACAGGGCTACTTATCGCGACTTTGGCATGGCATTTTGGTCCAAGCTGGCAGTTTGTTTTTGCGAGCGTACTCACC
TTTGTGCTTGTAGCACTGGCGGGTATCGATCTTGATGAGATGTTGCTCCCCGACCAAATGACGCTACCATTGCTTTGGCT
AGGCTTGATAATCAACCTAAATCATACCTTTGCGAGCCCAACCGATGCCATTATCGGCGCGGCGGCAGGCTATTTGAGTC
TATGGTCCATTTTCTGGTTGTTTAAAATCCTCACCGGCAAGGAAGGCATGGGTTATGGCGACTTTAAATTACTCGCCGTG
TTCGGTGCTTGGCTTGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTCGTTGGCATTAC
TATGATTGTTAGTAAACGCCTGAAACAAGGGAATCCAATCCCATTTGGCCCTTATATTGCCGCCGCAGGCTGGATAGCCT
TGCTATTTGGGCAACAGATTGTCGATTGGTACCTCTCAACACTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.186	95.779	0.49
pilD	Acinetobacter nosocomialis M2	47.869	99.026	0.474
pilD	Acinetobacter baumannii D1279779	47.712	99.351	0.474
pilD	Vibrio campbellii strain DS40M4	48.98	95.455	0.468
pilD	Neisseria gonorrhoeae MS11	43.986	94.481	0.416