Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | C7Y67_RS11150 | Genome accession | NZ_CP028342 |
| Coordinates | 2254476..2254760 (-) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus isolate R13 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2249476..2259760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7Y67_RS11125 (C7Y67_11120) | - | 2249970..2251184 (+) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
| C7Y67_RS11130 (C7Y67_11125) | yfbR | 2251275..2251859 (+) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| C7Y67_RS11135 (C7Y67_11130) | - | 2251872..2253206 (+) | 1335 | WP_049877409.1 | anti-phage deoxyguanosine triphosphatase | - |
| C7Y67_RS11140 (C7Y67_11135) | - | 2253216..2253830 (-) | 615 | WP_108744988.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| C7Y67_RS11145 (C7Y67_11140) | rrtA | 2253834..2254385 (+) | 552 | WP_162597326.1 | rhombosortase | - |
| C7Y67_RS11150 (C7Y67_11145) | comEA | 2254476..2254760 (-) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| C7Y67_RS11155 (C7Y67_11150) | ppiD | 2254911..2256770 (-) | 1860 | WP_108744990.1 | peptidylprolyl isomerase | - |
| C7Y67_RS11160 (C7Y67_11155) | - | 2256970..2257242 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=284266 C7Y67_RS11150 WP_021449594.1 2254476..2254760(-) (comEA) [Vibrio parahaemolyticus isolate R13]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=284266 C7Y67_RS11150 WP_021449594.1 2254476..2254760(-) (comEA) [Vibrio parahaemolyticus isolate R13]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGCTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGCTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |