Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | C9I28_RS07400 | Genome accession | NZ_CP028324 |
| Coordinates | 1661407..1662621 (-) | Length | 404 a.a. |
| NCBI ID | WP_107140923.1 | Uniprot ID | A0A2R4C7Q0 |
| Organism | Pseudoduganella armeniaca strain ZMN-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1656407..1667621
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9I28_RS07390 (C9I28_07390) | - | 1658159..1659997 (+) | 1839 | WP_107140922.1 | alpha-amylase family glycosyl hydrolase | - |
| C9I28_RS28530 | - | 1660046..1660297 (+) | 252 | WP_229415939.1 | hypothetical protein | - |
| C9I28_RS07395 (C9I28_07395) | - | 1660195..1661400 (+) | 1206 | WP_229415940.1 | MFS transporter | - |
| C9I28_RS07400 (C9I28_07400) | pilC | 1661407..1662621 (-) | 1215 | WP_107140923.1 | type II secretion system F family protein | Machinery gene |
| C9I28_RS07405 (C9I28_07405) | pilF | 1662632..1664320 (-) | 1689 | WP_229415941.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C9I28_RS07410 (C9I28_07410) | - | 1664452..1665723 (-) | 1272 | WP_107140925.1 | HlyC/CorC family transporter | - |
| C9I28_RS07415 (C9I28_07415) | - | 1665910..1667136 (+) | 1227 | WP_107140926.1 | glutamate carboxypeptidase | - |
| C9I28_RS07420 (C9I28_07420) | uraH | 1667121..1667474 (-) | 354 | WP_107140927.1 | hydroxyisourate hydrolase | - |
Sequence
Protein
Download Length: 404 a.a. Molecular weight: 43961.88 Da Isoelectric Point: 9.7386
>NTDB_id=284111 C9I28_RS07400 WP_107140923.1 1661407..1662621(-) (pilC) [Pseudoduganella armeniaca strain ZMN-3]
MARTGNQVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRAGRKVTDKDITLFTRQLATMMKA
GVPLLQAFDIVGKGHANPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTL
AMKAKIKSALTYPVAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLLVMAMSEFFVSYWYIIFGGLFAAIYFFFQ
AWKRSLAMQQAMDRLLLRVPVFGDVIRKATVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYLDATRKIQGEVSTGTS
LTVAMQNAEVFPNMVTQMVSIGEESGALDAMLGKVADFYEDEVDEAVASLSSLMEPAIMVILGILIGGLVVAMYLPIFKL
GSVV
MARTGNQVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRAGRKVTDKDITLFTRQLATMMKA
GVPLLQAFDIVGKGHANPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTL
AMKAKIKSALTYPVAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLLVMAMSEFFVSYWYIIFGGLFAAIYFFFQ
AWKRSLAMQQAMDRLLLRVPVFGDVIRKATVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYLDATRKIQGEVSTGTS
LTVAMQNAEVFPNMVTQMVSIGEESGALDAMLGKVADFYEDEVDEAVASLSSLMEPAIMVILGILIGGLVVAMYLPIFKL
GSVV
Nucleotide
Download Length: 1215 bp
>NTDB_id=284111 C9I28_RS07400 WP_107140923.1 1661407..1662621(-) (pilC) [Pseudoduganella armeniaca strain ZMN-3]
ATGGCACGAACCGGTAATCAAGTGAAGGAGTCCGTCTTCGCGTGGGAAGGCAAGGACAAGACGGGCAAGACGGTGCGCGG
CGAGCTGCGCGCCGGCGGCGAGGCCGTCGTCAACGTCACCTTGCGGCGCCAGGGCATCATGGTGACGAAGGTGAAGAAAA
AGGTGTACCGCGCCGGCCGCAAGGTGACGGACAAGGACATCACGCTGTTCACGCGCCAGTTGGCCACGATGATGAAGGCC
GGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGGCAAGGGCCACGCCAACCCGTCCGTATCGAAGCTGATCATGGACCT
GCGCGCCGACATCGAGACCGGCACGAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTACTTCGACCCGCTGTTCTGCA
ACCTGGTGGGCGCCGGCGAGCAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAGGAAAAGACCCTG
GCCATGAAGGCCAAGATCAAGTCGGCGCTGACCTATCCGGTGGCGATCCTGGCGGTGGCGTTCATCGTCACGGCCGTCAT
CATGATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCCGACCTGCCGGCGCCCACGCTGTTGGTGA
TGGCGATGTCGGAATTCTTCGTCAGCTACTGGTACATCATCTTCGGCGGCCTGTTCGCCGCCATCTACTTCTTCTTCCAG
GCCTGGAAACGCTCGCTGGCGATGCAGCAGGCGATGGACCGCCTGCTGCTGCGCGTACCCGTGTTCGGCGACGTGATCCG
CAAGGCCACCGTGGCACGCTGGACCCGCACGCTGTCGACGATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACT
CGGTCGGCGGCGCGGCCGGCAATGCGGTCTACCTGGACGCCACCCGCAAGATCCAGGGCGAGGTCTCGACCGGCACCAGC
CTGACGGTGGCGATGCAGAACGCCGAGGTGTTCCCCAACATGGTCACGCAGATGGTCTCGATCGGCGAGGAATCCGGCGC
GCTGGACGCGATGCTGGGCAAGGTGGCCGACTTCTACGAGGACGAAGTGGACGAGGCGGTGGCCTCGCTGTCCTCGCTGA
TGGAGCCGGCCATCATGGTCATCCTGGGTATCCTGATCGGCGGCCTGGTGGTGGCCATGTACCTGCCGATCTTTAAGCTG
GGTTCCGTGGTCTGA
ATGGCACGAACCGGTAATCAAGTGAAGGAGTCCGTCTTCGCGTGGGAAGGCAAGGACAAGACGGGCAAGACGGTGCGCGG
CGAGCTGCGCGCCGGCGGCGAGGCCGTCGTCAACGTCACCTTGCGGCGCCAGGGCATCATGGTGACGAAGGTGAAGAAAA
AGGTGTACCGCGCCGGCCGCAAGGTGACGGACAAGGACATCACGCTGTTCACGCGCCAGTTGGCCACGATGATGAAGGCC
GGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGGCAAGGGCCACGCCAACCCGTCCGTATCGAAGCTGATCATGGACCT
GCGCGCCGACATCGAGACCGGCACGAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTACTTCGACCCGCTGTTCTGCA
ACCTGGTGGGCGCCGGCGAGCAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAGGAAAAGACCCTG
GCCATGAAGGCCAAGATCAAGTCGGCGCTGACCTATCCGGTGGCGATCCTGGCGGTGGCGTTCATCGTCACGGCCGTCAT
CATGATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCCGACCTGCCGGCGCCCACGCTGTTGGTGA
TGGCGATGTCGGAATTCTTCGTCAGCTACTGGTACATCATCTTCGGCGGCCTGTTCGCCGCCATCTACTTCTTCTTCCAG
GCCTGGAAACGCTCGCTGGCGATGCAGCAGGCGATGGACCGCCTGCTGCTGCGCGTACCCGTGTTCGGCGACGTGATCCG
CAAGGCCACCGTGGCACGCTGGACCCGCACGCTGTCGACGATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACT
CGGTCGGCGGCGCGGCCGGCAATGCGGTCTACCTGGACGCCACCCGCAAGATCCAGGGCGAGGTCTCGACCGGCACCAGC
CTGACGGTGGCGATGCAGAACGCCGAGGTGTTCCCCAACATGGTCACGCAGATGGTCTCGATCGGCGAGGAATCCGGCGC
GCTGGACGCGATGCTGGGCAAGGTGGCCGACTTCTACGAGGACGAAGTGGACGAGGCGGTGGCCTCGCTGTCCTCGCTGA
TGGAGCCGGCCATCATGGTCATCCTGGGTATCCTGATCGGCGGCCTGGTGGTGGCCATGTACCTGCCGATCTTTAAGCTG
GGTTCCGTGGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
56 |
99.01 |
0.554 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.808 |
98.02 |
0.547 |
| pilG | Neisseria gonorrhoeae MS11 |
54.156 |
98.267 |
0.532 |
| pilG | Neisseria meningitidis 44/76-A |
53.904 |
98.267 |
0.53 |
| pilC | Acinetobacter baylyi ADP1 |
53.266 |
98.515 |
0.525 |
| pilC | Acinetobacter baumannii D1279779 |
51.385 |
98.267 |
0.505 |
| pilC | Vibrio cholerae strain A1552 |
40.404 |
98.02 |
0.396 |
| pilC | Vibrio campbellii strain DS40M4 |
39.798 |
98.267 |
0.391 |
| pilC | Thermus thermophilus HB27 |
37.594 |
98.762 |
0.371 |