Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M24_RS08815 Genome accession   NZ_CP028210
Coordinates   1757449..1758228 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM102746     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752449..1763228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M24_RS08795 (C7M24_01767) trmFO 1753136..1754443 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M24_RS08800 (C7M24_01768) xerC 1754513..1755430 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  C7M24_RS08805 (C7M24_01769) hslV 1755446..1755991 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  C7M24_RS08810 (C7M24_01770) hslU 1756008..1757411 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  C7M24_RS08815 (C7M24_01771) codY 1757449..1758228 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M24_RS08820 (C7M24_01772) flgB 1758582..1758971 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C7M24_RS08825 (C7M24_01773) flgC 1758971..1759423 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  C7M24_RS08830 (C7M24_01774) fliE 1759434..1759754 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  C7M24_RS08835 (C7M24_01775) fliF 1759797..1761407 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M24_RS08840 (C7M24_01776) fliG 1761420..1762436 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C7M24_RS08845 (C7M24_01777) fliH 1762429..1763184 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=282952 C7M24_RS08815 WP_003154263.1 1757449..1758228(+) (codY) [Bacillus velezensis strain SRCM102746]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=282952 C7M24_RS08815 WP_003154263.1 1757449..1758228(+) (codY) [Bacillus velezensis strain SRCM102746]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment