Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | LPC_RS12120 | Genome accession | NC_009494 |
| Coordinates | 2739549..2740670 (-) | Length | 373 a.a. |
| NCBI ID | WP_011947167.1 | Uniprot ID | - |
| Organism | Legionella pneumophila str. Corby | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2734549..2745670
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPC_RS12105 (LPC_1787) | - | 2735431..2735868 (-) | 438 | WP_011947164.1 | hypothetical protein | - |
| LPC_RS12110 (LPC_1788) | - | 2736149..2737444 (+) | 1296 | WP_011947165.1 | serine/threonine transporter | - |
| LPC_RS12115 (LPC_1789) | ankK | 2737537..2739462 (-) | 1926 | WP_011947166.1 | Dot/Icm T4SS effector AnkK/LegA5 | - |
| LPC_RS12120 (LPC_1790) | pilU | 2739549..2740670 (-) | 1122 | WP_011947167.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LPC_RS12125 (LPC_1791) | - | 2740760..2742688 (-) | 1929 | WP_011947168.1 | L-gulono-gamma-lactone oxidase | - |
| LPC_RS12130 (LPC_1792) | - | 2742976..2743812 (-) | 837 | WP_011947169.1 | phytanoyl-CoA dioxygenase family protein | - |
| LPC_RS12135 (LPC_1793) | radA | 2743809..2745164 (-) | 1356 | WP_040146513.1 | DNA repair protein RadA | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41771.07 Da Isoelectric Point: 5.4724
>NTDB_id=28247 LPC_RS12120 WP_011947167.1 2739549..2740670(-) (pilU) [Legionella pneumophila str. Corby]
MDITPFFKLMVDKGASDLFFSVGAPPNIKIEGITSPIGQVPIKSNQMAEIVLSIMNDAQQKEFESKMELNMAFSLAGVGR
FRINLFRQRGEVAMVVRYIKGEIPSIEDLNLPQILKSLVLELRGLVLVVGSTGSGKSTTLAAMINHRNENHRGHILTIED
PIEYIHQHKKSIVDQREIGIDTLSYDNALKNAMREAPDVILIGEIRDLNSMKHAIAYAETGHLCISTLHANNANQALDRV
INFFPDEARQQILLDLSLNLKAIISLRLIPGVDNQRVAAVEILINSPYISDLIEKGKIDDIKEVMARSTEQGMQTFDQAL
FNLYKEGKITKENAIKYADSKNNVGLQIRLGEEKNFNIQDENLQIQPDDLDRI
MDITPFFKLMVDKGASDLFFSVGAPPNIKIEGITSPIGQVPIKSNQMAEIVLSIMNDAQQKEFESKMELNMAFSLAGVGR
FRINLFRQRGEVAMVVRYIKGEIPSIEDLNLPQILKSLVLELRGLVLVVGSTGSGKSTTLAAMINHRNENHRGHILTIED
PIEYIHQHKKSIVDQREIGIDTLSYDNALKNAMREAPDVILIGEIRDLNSMKHAIAYAETGHLCISTLHANNANQALDRV
INFFPDEARQQILLDLSLNLKAIISLRLIPGVDNQRVAAVEILINSPYISDLIEKGKIDDIKEVMARSTEQGMQTFDQAL
FNLYKEGKITKENAIKYADSKNNVGLQIRLGEEKNFNIQDENLQIQPDDLDRI
Nucleotide
Download Length: 1122 bp
>NTDB_id=28247 LPC_RS12120 WP_011947167.1 2739549..2740670(-) (pilU) [Legionella pneumophila str. Corby]
ATGGATATTACTCCTTTTTTTAAGCTCATGGTCGATAAAGGTGCCTCAGATTTGTTTTTCAGTGTCGGGGCACCACCAAA
TATTAAAATCGAGGGCATCACATCACCTATTGGCCAGGTTCCTATCAAATCGAATCAAATGGCAGAAATTGTTTTATCTA
TTATGAATGACGCACAGCAAAAAGAATTTGAGTCTAAAATGGAACTCAATATGGCTTTTTCATTAGCTGGAGTAGGGCGT
TTCCGAATCAATTTATTCAGGCAACGTGGCGAAGTGGCTATGGTGGTGCGTTACATCAAGGGCGAAATACCTTCTATAGA
AGATTTAAATCTTCCTCAAATTTTAAAGTCTCTGGTCTTGGAGTTGCGAGGTTTAGTATTGGTTGTTGGGTCCACGGGAT
CGGGTAAATCAACGACTCTGGCCGCGATGATCAACCACCGTAATGAAAATCACAGAGGGCATATTTTAACAATAGAGGAT
CCTATTGAATATATACATCAACATAAAAAATCAATAGTTGATCAACGAGAGATAGGTATTGATACTCTAAGCTATGACAA
TGCATTGAAAAACGCAATGAGAGAAGCGCCTGATGTTATCTTAATTGGTGAAATTCGTGATCTTAACTCAATGAAACATG
CGATAGCTTATGCTGAAACAGGGCATTTGTGCATTTCCACTTTGCATGCCAATAACGCCAATCAGGCTCTGGATAGAGTA
ATTAATTTTTTCCCCGATGAGGCAAGACAACAGATATTATTAGATTTATCTCTTAATTTAAAAGCAATCATTTCATTACG
TTTGATACCAGGAGTTGATAATCAACGTGTCGCAGCAGTGGAGATCTTAATTAACTCTCCTTATATTTCCGATTTGATTG
AAAAAGGGAAGATAGACGATATTAAAGAAGTCATGGCAAGAAGCACGGAACAAGGCATGCAGACTTTTGATCAGGCTTTG
TTTAATTTATATAAAGAAGGAAAAATCACCAAAGAAAATGCGATTAAGTACGCTGATTCAAAAAACAATGTGGGTTTACA
AATTCGACTGGGTGAAGAAAAAAACTTCAATATTCAAGATGAGAATTTACAAATACAACCCGATGATCTTGATAGGATTT
AA
ATGGATATTACTCCTTTTTTTAAGCTCATGGTCGATAAAGGTGCCTCAGATTTGTTTTTCAGTGTCGGGGCACCACCAAA
TATTAAAATCGAGGGCATCACATCACCTATTGGCCAGGTTCCTATCAAATCGAATCAAATGGCAGAAATTGTTTTATCTA
TTATGAATGACGCACAGCAAAAAGAATTTGAGTCTAAAATGGAACTCAATATGGCTTTTTCATTAGCTGGAGTAGGGCGT
TTCCGAATCAATTTATTCAGGCAACGTGGCGAAGTGGCTATGGTGGTGCGTTACATCAAGGGCGAAATACCTTCTATAGA
AGATTTAAATCTTCCTCAAATTTTAAAGTCTCTGGTCTTGGAGTTGCGAGGTTTAGTATTGGTTGTTGGGTCCACGGGAT
CGGGTAAATCAACGACTCTGGCCGCGATGATCAACCACCGTAATGAAAATCACAGAGGGCATATTTTAACAATAGAGGAT
CCTATTGAATATATACATCAACATAAAAAATCAATAGTTGATCAACGAGAGATAGGTATTGATACTCTAAGCTATGACAA
TGCATTGAAAAACGCAATGAGAGAAGCGCCTGATGTTATCTTAATTGGTGAAATTCGTGATCTTAACTCAATGAAACATG
CGATAGCTTATGCTGAAACAGGGCATTTGTGCATTTCCACTTTGCATGCCAATAACGCCAATCAGGCTCTGGATAGAGTA
ATTAATTTTTTCCCCGATGAGGCAAGACAACAGATATTATTAGATTTATCTCTTAATTTAAAAGCAATCATTTCATTACG
TTTGATACCAGGAGTTGATAATCAACGTGTCGCAGCAGTGGAGATCTTAATTAACTCTCCTTATATTTCCGATTTGATTG
AAAAAGGGAAGATAGACGATATTAAAGAAGTCATGGCAAGAAGCACGGAACAAGGCATGCAGACTTTTGATCAGGCTTTG
TTTAATTTATATAAAGAAGGAAAAATCACCAAAGAAAATGCGATTAAGTACGCTGATTCAAAAAACAATGTGGGTTTACA
AATTCGACTGGGTGAAGAAAAAAACTTCAATATTCAAGATGAGAATTTACAAATACAACCCGATGATCTTGATAGGATTT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.056 |
95.442 |
0.525 |
| pilU | Acinetobacter baylyi ADP1 |
52.941 |
95.71 |
0.507 |
| pilU | Vibrio cholerae strain A1552 |
48.286 |
93.834 |
0.453 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.428 |
90.885 |
0.413 |
| pilT | Legionella pneumophila strain ERS1305867 |
43.275 |
91.689 |
0.397 |
| pilT | Legionella pneumophila strain Lp02 |
43.275 |
91.689 |
0.397 |
| pilT | Neisseria meningitidis 8013 |
42.363 |
93.029 |
0.394 |
| pilT | Neisseria gonorrhoeae MS11 |
42.363 |
93.029 |
0.394 |
| pilT | Pseudomonas aeruginosa PAK |
42.566 |
91.957 |
0.391 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.983 |
91.957 |
0.386 |
| pilT | Acinetobacter baumannii strain A118 |
43.114 |
89.544 |
0.386 |
| pilT | Acinetobacter nosocomialis M2 |
43.114 |
89.544 |
0.386 |
| pilT | Acinetobacter baumannii D1279779 |
43.114 |
89.544 |
0.386 |
| pilT | Acinetobacter baylyi ADP1 |
40.882 |
91.153 |
0.373 |
| pilT | Vibrio cholerae strain A1552 |
41.945 |
88.204 |
0.37 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.945 |
88.204 |
0.37 |