Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | C9I78_RS11035 | Genome accession | NZ_CP028141 |
| Coordinates | 2233862..2234146 (-) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain R14 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2228862..2239146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9I78_RS11010 (C9I78_11005) | - | 2229356..2230570 (+) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
| C9I78_RS11015 (C9I78_11010) | yfbR | 2230661..2231245 (+) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| C9I78_RS11020 (C9I78_11015) | - | 2231258..2232592 (+) | 1335 | WP_049877409.1 | anti-phage deoxyguanosine triphosphatase | - |
| C9I78_RS11025 (C9I78_11020) | - | 2232602..2233216 (-) | 615 | WP_108744988.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| C9I78_RS11030 (C9I78_11025) | rrtA | 2233220..2233771 (+) | 552 | WP_162597326.1 | rhombosortase | - |
| C9I78_RS11035 (C9I78_11030) | comEA | 2233862..2234146 (-) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| C9I78_RS11040 (C9I78_11035) | ppiD | 2234297..2236156 (-) | 1860 | WP_108744990.1 | peptidylprolyl isomerase | - |
| C9I78_RS11045 (C9I78_11040) | - | 2236356..2236628 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=281644 C9I78_RS11035 WP_021449594.1 2233862..2234146(-) (comEA) [Vibrio parahaemolyticus strain R14]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=281644 C9I78_RS11035 WP_021449594.1 2233862..2234146(-) (comEA) [Vibrio parahaemolyticus strain R14]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGCTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGCTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |