Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | XFASM23_RS10215 | Genome accession | NC_010577 |
| Coordinates | 2272597..2273043 (+) | Length | 148 a.a. |
| NCBI ID | WP_012382763.1 | Uniprot ID | B2I9Q8 |
| Organism | Xylella fastidiosa M23 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2267597..2278043
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFASM23_RS10195 (XfasM23_2027) | - | 2267845..2269182 (+) | 1338 | WP_004090387.1 | HAMP domain-containing sensor histidine kinase | - |
| XFASM23_RS10200 (XfasM23_2028) | coaE | 2269449..2270072 (-) | 624 | WP_004090385.1 | dephospho-CoA kinase | - |
| XFASM23_RS10205 (XfasM23_2029) | pilD | 2270084..2270947 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| XFASM23_RS10210 (XfasM23_2030) | pilC | 2270954..2272156 (-) | 1203 | WP_011098309.1 | type II secretion system F family protein | Machinery gene |
| XFASM23_RS10215 (XfasM23_2031) | pilA | 2272597..2273043 (+) | 447 | WP_012382763.1 | pilin | Machinery gene |
| XFASM23_RS10220 (XfasM23_2032) | - | 2273289..2273516 (-) | 228 | WP_011098310.1 | hypothetical protein | - |
| XFASM23_RS10225 (XfasM23_2033) | pilA/pilAI | 2274352..2274792 (+) | 441 | WP_004090375.1 | pilin | Machinery gene |
| XFASM23_RS10230 (XfasM23_2034) | pilB | 2275635..2277368 (+) | 1734 | WP_004090374.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15448.55 Da Isoelectric Point: 8.5024
>NTDB_id=28155 XFASM23_RS10215 WP_012382763.1 2272597..2273043(+) (pilA) [Xylella fastidiosa M23]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQVTAGLADITPGKVQAESLIADGKSTTNASDIGLRTDTTRCGI
TVKVENTGLANITCTIKGNSQVNGQTIAWNRSVDNSAGTNGANNGGQWTCNTTVTSDALRPFGCTAAK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQVTAGLADITPGKVQAESLIADGKSTTNASDIGLRTDTTRCGI
TVKVENTGLANITCTIKGNSQVNGQTIAWNRSVDNSAGTNGANNGGQWTCNTTVTSDALRPFGCTAAK
Nucleotide
Download Length: 447 bp
>NTDB_id=28155 XFASM23_RS10215 WP_012382763.1 2272597..2273043(+) (pilA) [Xylella fastidiosa M23]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAAGTCACCGCGGGACTGGCTGACATTACACCGGGTAAGGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACAACCAATGCGAGCGATATTGGACTGCGCACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGAAAACACCGGACTTGCCAACATCACATGTACGATTAAGGGCAATTCTCAGGTGAATGGTCAAACCAT
CGCTTGGAATCGTAGCGTCGATAACTCCGCGGGCACCAATGGCGCCAATAATGGAGGTCAGTGGACATGCAACACCACTG
TGACATCCGATGCACTGAGACCTTTCGGCTGCACTGCCGCTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAAGTCACCGCGGGACTGGCTGACATTACACCGGGTAAGGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACAACCAATGCGAGCGATATTGGACTGCGCACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGAAAACACCGGACTTGCCAACATCACATGTACGATTAAGGGCAATTCTCAGGTGAATGGTCAAACCAT
CGCTTGGAATCGTAGCGTCGATAACTCCGCGGGCACCAATGGCGCCAATAATGGAGGTCAGTGGACATGCAACACCACTG
TGACATCCGATGCACTGAGACCTTTCGGCTGCACTGCCGCTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae C6706 |
42.177 |
99.324 |
0.419 |
| pilA | Acinetobacter baumannii strain A118 |
41.333 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.541 |
100 |
0.405 |
| pilA | Pseudomonas aeruginosa PAK |
36.875 |
100 |
0.399 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.726 |
98.649 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.162 |
100 |
0.372 |