Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7V42_RS16620 Genome accession   NZ_CP028127
Coordinates   3638522..3639781 (+) Length   419 a.a.
NCBI ID   WP_017116967.1    Uniprot ID   A0AAE8F3A1
Organism   Xanthomonas vasicola pv. vasculorum strain SAM119     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3633522..3644781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V42_RS16600 (C7V42_16575) - 3634059..3635387 (-) 1329 Protein_3090 hypothetical protein -
  C7V42_RS16610 (C7V42_16585) - 3636020..3637609 (-) 1590 WP_010363790.1 phosphoethanolamine transferase -
  C7V42_RS16615 (C7V42_16590) pilA2 3637745..3638170 (-) 426 WP_010363792.1 pilin Machinery gene
  C7V42_RS16620 (C7V42_16595) pilC 3638522..3639781 (+) 1260 WP_017116967.1 type II secretion system F family protein Machinery gene
  C7V42_RS16625 (C7V42_16600) - 3639788..3640651 (+) 864 WP_017117848.1 A24 family peptidase -
  C7V42_RS16630 (C7V42_16605) coaE 3640665..3641270 (+) 606 WP_010363800.1 dephospho-CoA kinase -
  C7V42_RS16635 (C7V42_16610) - 3641342..3642676 (-) 1335 WP_010363803.1 HAMP domain-containing sensor histidine kinase -
  C7V42_RS16640 (C7V42_16615) - 3642669..3643346 (-) 678 WP_003490678.1 response regulator transcription factor -
  C7V42_RS22940 (C7V42_16620) - 3643426..3643848 (-) 423 WP_170962561.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45947.48 Da        Isoelectric Point: 10.2301

>NTDB_id=281389 C7V42_RS16620 WP_017116967.1 3638522..3639781(+) (pilC) [Xanthomonas vasicola pv. vasculorum strain SAM119]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQAARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMIGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVASYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTLLLVNASRFMVSYWWL
MLVVAVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=281389 C7V42_RS16620 WP_017116967.1 3638522..3639781(+) (pilC) [Xanthomonas vasicola pv. vasculorum strain SAM119]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACAAGCATGCTGCAGACCTTCGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGGCAGCCCGTAACGCTAATATGTTGCGAGCAGAACTGCGCCGTC
AGGGCATTGTGCCCAGCATGGTCAAGCAGAAGCCGAAGCCTCTGTTTGGAGCGGCGGGGAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACAATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTAGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGATTGGTCAGATCAGGACAGACATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAACTCTACCGCAACCTTGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTGCTCGAAACGGTCGCCAGCTACAAAGAAAACATTGAAGCCCTAAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCTGCTCCTCGTCAATGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTGGTCGCAGTTGGATCCGTTGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTGATCCTCAAGGTACCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAAGCAGGCGTCCCTCTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTAGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGACGCGCTCAGCAGCCTGCTGGAACCGCTCATCATGGTGTTCATTGGCACCATTGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baylyi ADP1

50.123

96.659

0.484
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

42.857

95.227

0.408
  pilG Neisseria meningitidis 44/76-A

42.356

95.227

0.403
  pilC Vibrio cholerae strain A1552

40

95.465

0.382
  pilC Vibrio campbellii strain DS40M4

38.5

95.465

0.368
  pilC Thermus thermophilus HB27

38.25

95.465

0.365

Multiple sequence alignment