Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V55_RS20905 Genome accession   NZ_CP032989
Coordinates   4220213..4220689 (-) Length   158 a.a.
NCBI ID   WP_001384029.1    Uniprot ID   -
Organism   Escherichia coli strain W2-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4215213..4225689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS20860 - 4215338..4215442 (-) 105 Protein_3976 HNH endonuclease -
  D9V55_RS20865 - 4215542..4216414 (+) 873 WP_000168567.1 phosphorothioated DNA-binding restriction endonuclease -
  D9V55_RS20870 - 4216525..4217523 (-) 999 WP_001240355.1 membrane protein -
  D9V55_RS26365 - 4217961..4218095 (-) 135 Protein_3979 transcriptional regulator -
  D9V55_RS25495 - 4218065..4218208 (-) 144 Protein_3980 hypothetical protein -
  D9V55_RS20880 - 4218293..4218490 (-) 198 WP_121636723.1 DUF957 domain-containing protein -
  D9V55_RS20885 - 4218502..4218993 (-) 492 WP_023155722.1 DUF5983 family protein -
  D9V55_RS20890 - 4218990..4219367 (-) 378 WP_001094443.1 TA system toxin CbtA family protein -
  D9V55_RS20895 - 4219457..4219825 (-) 369 WP_001285607.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D9V55_RS20900 - 4219905..4220126 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  D9V55_RS20905 radC 4220213..4220689 (-) 477 WP_001384029.1 RadC family protein Machinery gene
  D9V55_RS20910 - 4220704..4221189 (-) 486 WP_000213722.1 antirestriction protein -
  D9V55_RS20915 - 4221281..4222099 (-) 819 WP_001175175.1 DUF932 domain-containing protein -
  D9V55_RS20920 - 4222189..4222398 (-) 210 WP_032150870.1 DUF905 family protein -
  D9V55_RS20925 - 4222428..4223105 (-) 678 WP_001097301.1 hypothetical protein -
  D9V55_RS20930 - 4223253..4223933 (-) 681 WP_001282919.1 WYL domain-containing protein -
  D9V55_RS20935 - 4224136..4225020 (-) 885 WP_000010408.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=281388 D9V55_RS20905 WP_001384029.1 4220213..4220689(-) (radC) [Escherichia coli strain W2-5]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281388 D9V55_RS20905 WP_001384029.1 4220213..4220689(-) (radC) [Escherichia coli strain W2-5]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment