Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J84_RS04070 Genome accession   NZ_CP027761
Coordinates   936140..937348 (-) Length   402 a.a.
NCBI ID   WP_124434946.1    Uniprot ID   -
Organism   Pseudomonas sp. R11-23-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 931140..942348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J84_RS04035 (C4J84_0793) - 932438..932611 (-) 174 WP_044286631.1 DUF3094 family protein -
  C4J84_RS04040 (C4J84_0794) - 932665..933294 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J84_RS04045 (C4J84_0795) - 933495..934184 (+) 690 WP_124369616.1 energy-coupling factor ABC transporter permease -
  C4J84_RS04050 (C4J84_0796) - 934248..934463 (+) 216 WP_124361242.1 hypothetical protein -
  C4J84_RS04055 (C4J84_0797) yacG 934460..934660 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J84_RS04060 (C4J84_0798) coaE 934657..935280 (-) 624 WP_124403049.1 dephospho-CoA kinase -
  C4J84_RS04065 (C4J84_0799) pilD 935277..936143 (-) 867 WP_124434945.1 A24 family peptidase Machinery gene
  C4J84_RS04070 (C4J84_0800) pilC 936140..937348 (-) 1209 WP_124434946.1 type II secretion system F family protein Machinery gene
  C4J84_RS04075 (C4J84_0801) - 937548..937961 (+) 414 WP_124368933.1 pilin -
  C4J84_RS04085 (C4J84_0803) - 938275..938580 (+) 306 WP_124361246.1 DUF6388 family protein -
  C4J84_RS04090 (C4J84_0804) nadC 938700..939548 (-) 849 WP_124434947.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J84_RS04095 (C4J84_0805) - 939795..941951 (+) 2157 WP_124434948.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43462.89 Da        Isoelectric Point: 9.9018

>NTDB_id=280286 C4J84_RS04070 WP_124434946.1 936140..937348(-) (pilC) [Pseudomonas sp. R11-23-07]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQPADIALFTRQLATLLKAGI
PLLQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMHVVPQFQNLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRHGLEAGLLKIPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLDKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=280286 C4J84_RS04070 WP_124434946.1 936140..937348(-) (pilC) [Pseudomonas sp. R11-23-07]
ATGAACGACACCTCAACGATCTACACCTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAACCCGCAGACATTGCCTTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGTTGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGCGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTATTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCATGTGGTGCCGCAATTCCAGAACCTGTTCGCCGGGGTCGACAGCCCGTTGCCCGGTTTCACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGCGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCACGGACTGGAGGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGTTGAACAAAGC
GGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCAACAGGTATGCAGCTGAAT
CAATCCATGGCCGCCAGCGGGCTGTTTCCCGGCATGGCGATCCAGATGACAGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGACAAGGTCGCGAGCCATTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CACTGATCATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.04

99.005

0.575
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Acinetobacter baumannii D1279779

50.633

98.259

0.498
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilC Vibrio cholerae strain A1552

38.191

99.005

0.378
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.343

99.254

0.371
  pilC Vibrio campbellii strain DS40M4

36.802

98.01

0.361

Multiple sequence alignment