Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   D9C08_RS18260 Genome accession   NZ_CP032872
Coordinates   3383770..3384465 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3378770..3389465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS18235 (D9C08_18235) minD 3379706..3380512 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  D9C08_RS18240 (D9C08_18240) minC 3380514..3381194 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  D9C08_RS18245 (D9C08_18245) mreD 3381247..3381765 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  D9C08_RS18250 (D9C08_18250) mreC 3381762..3382634 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D9C08_RS18255 (D9C08_18255) mreB 3382665..3383678 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D9C08_RS18260 (D9C08_18260) ysxA/radC 3383770..3384465 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  D9C08_RS18265 (D9C08_18265) maf 3384502..3385071 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  D9C08_RS18270 (D9C08_18270) spoIIB 3385224..3386222 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  D9C08_RS18275 (D9C08_18275) comC 3386356..3387102 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  D9C08_RS18280 (D9C08_18280) folC 3387242..3388534 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=280285 D9C08_RS18260 WP_014480455.1 3383770..3384465(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain 2KL1]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=280285 D9C08_RS18260 WP_014480455.1 3383770..3384465(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain 2KL1]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment