Detailed information NTG0280285

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J84_RS04065
• Genome accession: NZ_CP027761
• Coordinates: 935277..936143 (-)
• Length: 288 a.a.
• NCBI ID: WP_124434945.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R11-23-07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 930277..941143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J84_RS04030 (C4J84_0792)	-	931079..932377 (-)	1299	WP_124369614.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J84_RS04035 (C4J84_0793)	-	932438..932611 (-)	174	WP_044286631.1	DUF3094 family protein	-
C4J84_RS04040 (C4J84_0794)	-	932665..933294 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J84_RS04045 (C4J84_0795)	-	933495..934184 (+)	690	WP_124369616.1	energy-coupling factor ABC transporter permease	-
C4J84_RS04050 (C4J84_0796)	-	934248..934463 (+)	216	WP_124361242.1	hypothetical protein	-
C4J84_RS04055 (C4J84_0797)	yacG	934460..934660 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J84_RS04060 (C4J84_0798)	coaE	934657..935280 (-)	624	WP_124403049.1	dephospho-CoA kinase	-
C4J84_RS04065 (C4J84_0799)	pilD	935277..936143 (-)	867	WP_124434945.1	A24 family peptidase	Machinery gene
C4J84_RS04070 (C4J84_0800)	pilC	936140..937348 (-)	1209	WP_124434946.1	type II secretion system F family protein	Machinery gene
C4J84_RS04075 (C4J84_0801)	-	937548..937961 (+)	414	WP_124368933.1	pilin	-
C4J84_RS04085 (C4J84_0803)	-	938275..938580 (+)	306	WP_124361246.1	DUF6388 family protein	-
C4J84_RS04090 (C4J84_0804)	nadC	938700..939548 (-)	849	WP_124434947.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31636.85 Da
• Isoelectric Point: 8.1746

>NTDB_id=280285 C4J84_RS04065 WP_124434945.1 935277..936143(-) (pilD) [Pseudomonas sp. R11-23-07]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCSHCHATIGARYPFTELACALISATVAWHFGFSWQAGAALLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPEALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=280285 C4J84_RS04065 WP_124434945.1 935277..936143(-) (pilD) [Pseudomonas sp. R11-23-07]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAAGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCGGCGCACGTTACCC
CTTCACCGAACTGGCATGCGCGCTGATCAGCGCCACTGTCGCCTGGCACTTCGGTTTCAGCTGGCAGGCGGGCGCGGCGC
TGTTGCTGAGTTGGGGATTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTATGGCTGGGGCTTATGGTCAACAGCGCGGGCCTGCTGGCGACATTGCCCGAGGCGTTGTGGGGCGCGGTGTTTGG
CTACATGAGCCTTTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGTGACTTCAAGC
TACTCGCATTGTTGGGTGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGTTGATGGCATCACTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGCCCCTGCTTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.799	96.528	0.5
pilD	Vibrio campbellii strain DS40M4	49.104	96.875	0.476
pilD	Acinetobacter baumannii D1279779	45.126	96.181	0.434
pilD	Acinetobacter nosocomialis M2	44.404	96.181	0.427
pilD	Neisseria gonorrhoeae MS11	46.899	89.583	0.42