Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J85_RS03845 Genome accession   NZ_CP027760
Coordinates   877405..878613 (-) Length   402 a.a.
NCBI ID   WP_124409024.1    Uniprot ID   A0A3G8C0T1
Organism   Pseudomonas sp. R4-34-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 872405..883613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J85_RS03810 (C4J85_0752) - 873703..873876 (-) 174 WP_124361240.1 DUF3094 family protein -
  C4J85_RS03815 (C4J85_0753) - 873930..874559 (-) 630 WP_083360208.1 DUF1780 domain-containing protein -
  C4J85_RS03820 (C4J85_0754) - 874760..875449 (+) 690 WP_124409021.1 energy-coupling factor ABC transporter permease -
  C4J85_RS03825 (C4J85_0755) - 875513..875728 (+) 216 WP_124361242.1 hypothetical protein -
  C4J85_RS03830 (C4J85_0756) yacG 875725..875925 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J85_RS03835 (C4J85_0757) coaE 875922..876545 (-) 624 WP_124409022.1 dephospho-CoA kinase -
  C4J85_RS03840 (C4J85_0758) pilD 876542..877408 (-) 867 WP_124409023.1 A24 family peptidase Machinery gene
  C4J85_RS03845 (C4J85_0759) pilC 877405..878613 (-) 1209 WP_124409024.1 type II secretion system F family protein Machinery gene
  C4J85_RS03850 (C4J85_0760) - 878813..879226 (+) 414 WP_124411162.1 pilin -
  C4J85_RS03860 (C4J85_0762) - 879540..879845 (+) 306 WP_124361246.1 DUF6388 family protein -
  C4J85_RS03865 (C4J85_0763) nadC 879965..880813 (-) 849 WP_124409025.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J85_RS03870 (C4J85_0765) - 881061..883217 (+) 2157 WP_124409026.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43437.82 Da        Isoelectric Point: 10.0099

>NTDB_id=280262 C4J85_RS03845 WP_124409024.1 877405..878613(-) (pilC) [Pseudomonas sp. R4-34-07]
MNDTSTVYTWQGINRKGRRVSGQTTGHDLALIKAQLRQQGICPERVRRKSSGLPSLAPPIQPADIALFTRQLATLLKAGI
PLLQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQNLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVVIGAWRHAY
RVSPGFRHGLEAGLLKVPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLDKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=280262 C4J85_RS03845 WP_124409024.1 877405..878613(-) (pilC) [Pseudomonas sp. R4-34-07]
ATGAACGACACCTCAACGGTCTACACCTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGAGCGGACAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCGTGTGCGCAGGAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAACCCGCAGACATTGCCTTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCTGGCATC
CCCTTGTTGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGCGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCACCTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTACTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTGGTGCCGCAATTCCAGAACCTGTTCGCCGGGGTCGACAGCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGCGTGGTAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCACGGGCTGGAGGCGGGTTTGTTGAAAGTCCCCCTGGCAGGCAAACTGTTGAACAAAGC
GGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCAACGGGTATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGGCTGTTTCCCGGCATGGCGATCCAGATGACAGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGACAAGGTCGCGAGCCATTACGAAGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CACTGATTATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8C0T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.543

99.005

0.58
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Acinetobacter baumannii D1279779

50.886

98.259

0.5
  pilC Legionella pneumophila strain ERS1305867

48.354

98.259

0.475
  pilC Vibrio cholerae strain A1552

38.384

98.507

0.378
  pilG Neisseria gonorrhoeae MS11

39.895

94.776

0.378
  pilC Thermus thermophilus HB27

37.594

99.254

0.373
  pilG Neisseria meningitidis 44/76-A

39.37

94.776

0.373
  pilC Vibrio campbellii strain DS40M4

37.31

98.01

0.366

Multiple sequence alignment