Detailed information NTG0280261

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J85_RS03840
• Genome accession: NZ_CP027760
• Coordinates: 876542..877408 (-)
• Length: 288 a.a.
• NCBI ID: WP_124409023.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R4-34-07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 871542..882408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J85_RS03805 (C4J85_0751)	-	872344..873642 (-)	1299	WP_124361239.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J85_RS03810 (C4J85_0752)	-	873703..873876 (-)	174	WP_124361240.1	DUF3094 family protein	-
C4J85_RS03815 (C4J85_0753)	-	873930..874559 (-)	630	WP_083360208.1	DUF1780 domain-containing protein	-
C4J85_RS03820 (C4J85_0754)	-	874760..875449 (+)	690	WP_124409021.1	energy-coupling factor ABC transporter permease	-
C4J85_RS03825 (C4J85_0755)	-	875513..875728 (+)	216	WP_124361242.1	hypothetical protein	-
C4J85_RS03830 (C4J85_0756)	yacG	875725..875925 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J85_RS03835 (C4J85_0757)	coaE	875922..876545 (-)	624	WP_124409022.1	dephospho-CoA kinase	-
C4J85_RS03840 (C4J85_0758)	pilD	876542..877408 (-)	867	WP_124409023.1	A24 family peptidase	Machinery gene
C4J85_RS03845 (C4J85_0759)	pilC	877405..878613 (-)	1209	WP_124409024.1	type II secretion system F family protein	Machinery gene
C4J85_RS03850 (C4J85_0760)	-	878813..879226 (+)	414	WP_124411162.1	pilin	-
C4J85_RS03860 (C4J85_0762)	-	879540..879845 (+)	306	WP_124361246.1	DUF6388 family protein	-
C4J85_RS03865 (C4J85_0763)	nadC	879965..880813 (-)	849	WP_124409025.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31582.85 Da
• Isoelectric Point: 8.3952

>NTDB_id=280261 C4J85_RS03840 WP_124409023.1 876542..877408(-) (pilD) [Pseudomonas sp. R4-34-07]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPR
ENIPVLSYLMLKGRCSHCHATISARYPLTELACALISATVAWHFGLSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=280261 C4J85_RS03840 WP_124409023.1 876542..877408(-) (pilD) [Pseudomonas sp. R4-34-07]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTTCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAAGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTGATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCAGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCAGCGCGCGTTACCC
CCTCACCGAACTGGCATGCGCGCTGATCAGCGCCACTGTCGCCTGGCACTTCGGTTTGAGCTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTGTGGCTGGGGCTTATGGTCAACAGCGCGGGCCTGCTGGCAACACTGCCCGATGCGTTATGGGGCGCGGTGTTTGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGTGACTTCAAGC
TACTCGCATTGTTGGGTGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGTTGATGGCGTCGCTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGCCCCTGCTTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.518	96.528	0.507
pilD	Vibrio campbellii strain DS40M4	49.821	96.875	0.483
pilD	Acinetobacter baumannii D1279779	45.487	96.181	0.437
pilD	Acinetobacter nosocomialis M2	44.765	96.181	0.431
pilD	Neisseria gonorrhoeae MS11	47.287	89.583	0.424