Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4J86_RS04510 Genome accession   NZ_CP027759
Coordinates   1028615..1029823 (-) Length   402 a.a.
NCBI ID   WP_124369618.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-7-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023615..1034823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J86_RS04475 (C4J86_0885) - 1024913..1025086 (-) 174 WP_044286631.1 DUF3094 family protein -
  C4J86_RS04480 (C4J86_0886) - 1025140..1025769 (-) 630 WP_124369615.1 DUF1780 domain-containing protein -
  C4J86_RS04485 (C4J86_0887) - 1025970..1026659 (+) 690 WP_124369616.1 energy-coupling factor ABC transporter permease -
  C4J86_RS04490 (C4J86_0888) - 1026723..1026938 (+) 216 WP_124361242.1 hypothetical protein -
  C4J86_RS04495 (C4J86_0889) yacG 1026935..1027135 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  C4J86_RS04500 (C4J86_0890) coaE 1027132..1027755 (-) 624 WP_124365786.1 dephospho-CoA kinase -
  C4J86_RS04505 (C4J86_0891) pilD 1027752..1028618 (-) 867 WP_124369617.1 A24 family peptidase Machinery gene
  C4J86_RS04510 (C4J86_0892) pilC 1028615..1029823 (-) 1209 WP_124369618.1 type II secretion system F family protein Machinery gene
  C4J86_RS04515 (C4J86_0893) - 1030023..1030436 (+) 414 WP_124372392.1 pilin -
  C4J86_RS04525 (C4J86_0895) - 1030750..1031055 (+) 306 WP_124361246.1 DUF6388 family protein -
  C4J86_RS04530 (C4J86_0896) nadC 1031175..1032023 (-) 849 WP_124369619.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4J86_RS04535 (C4J86_0898) - 1032271..1034427 (+) 2157 WP_124369620.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43458.81 Da        Isoelectric Point: 9.7776

>NTDB_id=280238 C4J86_RS04510 WP_124369618.1 1028615..1029823(-) (pilC) [Pseudomonas sp. R2-7-07]
MNDTSTIYTWQGINRKGRRVCGQTTGHDLALIKAQLRQQGICPEHVRRKSSGLPSLAPPIQSADIALFTRQLATLFKAGI
PLLQAFDIIREGVENRALRELVEGLKQHVAAGNSLASTLRQYPRYFDELYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVASLVSAVLLMQVVPQFQNLFAGVDSPLPGFTLGVIALSDFLRQAWWMLALSLGVAIGAWRHAY
RVSPGFRHGLEAGLLKIPLAGKLLNKAAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLDKVASHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=280238 C4J86_RS04510 WP_124369618.1 1028615..1029823(-) (pilC) [Pseudomonas sp. R2-7-07]
ATGAACGACACCTCAACGATCTACACTTGGCAAGGCATCAACCGCAAAGGCCGCCGGGTGTGCGGGCAAACCACGGGGCA
TGACCTGGCGCTGATCAAGGCGCAACTGCGCCAGCAAGGCATCTGCCCCGAGCATGTGCGCAGAAAATCGTCGGGCCTGC
CAAGCCTGGCTCCGCCGATTCAGTCCGCCGACATCGCCCTGTTCACCCGCCAGCTGGCGACGCTGTTTAAGGCTGGCATC
CCCTTGTTGCAAGCTTTCGACATCATCCGCGAGGGCGTCGAGAACCGAGCGCTGCGCGAGTTGGTCGAGGGTTTGAAACA
ACACGTCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAATACCCCCGTTATTTCGATGAGCTGTACTGCCATTTGA
TTGCCGCCGGTGAACAGGCAGGTGCCCTGGAAACGCTGCTGGAGCGAGTGGCCATTCATCTGGAAAAAAGCCAACGGCTC
AAGACCAGAATCAAGAAAGCCATGACCTACCCTCTCGCCGTATTGGTGGTGGCCAGCCTGGTCAGCGCAGTGTTGCTGAT
GCAGGTGGTGCCGCAATTCCAGAACCTGTTCGCCGGGGTCGACAGCCCATTGCCCGGTTTTACCCTGGGGGTCATCGCCC
TCTCCGACTTTCTGCGACAGGCCTGGTGGATGCTGGCGCTGAGCCTGGGCGTGGCAATAGGCGCCTGGCGCCACGCCTAC
CGTGTTTCGCCGGGTTTTCGCCACGGGCTGGAGGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGTTGAACAAAGC
GGCCGTCGCCCGCTACGCCCGCACGCTTTCAACCACCTTTGCGGCAGGTGTTCCCCTGGTGCAGGCACTGGGCTCAGTGG
CCGGCGCCGTCGGTAACGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCAACGGGTATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGGCTGTTTCCAGGCATGGCGATCCAGATGACAGCAATCGGCGAAGAGTCCGGCACGCTGGA
CCGCATGCTGGACAAGGTCGCGAGCCATTACGAGGCCGACGTAGAAACCCTCGTCGATAACCTTACCAGCCTGATGGAAC
CACTGATTATGGTCGTGCTGGGGAGCATTGTCGGTGCATTGGTGATTGCGATGTACCTGCCGGTGTTTCAATTAGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.789

99.005

0.572
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Acinetobacter baumannii D1279779

50.633

98.259

0.498
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilC Vibrio cholerae strain A1552

38.191

99.005

0.378
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.093

99.254

0.368
  pilC Vibrio campbellii strain DS40M4

36.591

99.254

0.363

Multiple sequence alignment