Detailed information NTG0280237

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J86_RS04505
• Genome accession: NZ_CP027759
• Coordinates: 1027752..1028618 (-)
• Length: 288 a.a.
• NCBI ID: WP_124369617.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R2-7-07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1022752..1033618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J86_RS04470 (C4J86_0884)	-	1023554..1024852 (-)	1299	WP_124369614.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J86_RS04475 (C4J86_0885)	-	1024913..1025086 (-)	174	WP_044286631.1	DUF3094 family protein	-
C4J86_RS04480 (C4J86_0886)	-	1025140..1025769 (-)	630	WP_124369615.1	DUF1780 domain-containing protein	-
C4J86_RS04485 (C4J86_0887)	-	1025970..1026659 (+)	690	WP_124369616.1	energy-coupling factor ABC transporter permease	-
C4J86_RS04490 (C4J86_0888)	-	1026723..1026938 (+)	216	WP_124361242.1	hypothetical protein	-
C4J86_RS04495 (C4J86_0889)	yacG	1026935..1027135 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J86_RS04500 (C4J86_0890)	coaE	1027132..1027755 (-)	624	WP_124365786.1	dephospho-CoA kinase	-
C4J86_RS04505 (C4J86_0891)	pilD	1027752..1028618 (-)	867	WP_124369617.1	A24 family peptidase	Machinery gene
C4J86_RS04510 (C4J86_0892)	pilC	1028615..1029823 (-)	1209	WP_124369618.1	type II secretion system F family protein	Machinery gene
C4J86_RS04515 (C4J86_0893)	-	1030023..1030436 (+)	414	WP_124372392.1	pilin	-
C4J86_RS04525 (C4J86_0895)	-	1030750..1031055 (+)	306	WP_124361246.1	DUF6388 family protein	-
C4J86_RS04530 (C4J86_0896)	nadC	1031175..1032023 (-)	849	WP_124369619.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31659.89 Da
• Isoelectric Point: 8.1746

>NTDB_id=280237 C4J86_RS04505 WP_124369617.1 1027752..1028618(-) (pilD) [Pseudomonas sp. R2-7-07]
MSALLGEQPWVFVGVALLLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPVVPAGPVYNLMHPGSCCPRCDQRIRPW
ENIPVLSYLMLKGRCSHCHATISARYPLTELACALISANVAWHFGFSWQAGAVLLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLMVNSAGLLATLPDALWGAVFGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGVLLMRWRKTGASVPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=280237 C4J86_RS04505 WP_124369617.1 1027752..1028618(-) (pilD) [Pseudomonas sp. R2-7-07]
TTGAGTGCGTTGCTGGGCGAGCAGCCCTGGGTGTTTGTGGGCGTGGCGCTGCTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGTCTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGCGCCCAAGCCCATGAAATTCTCGGCCTGCCCG
TCGTACCGGCGGGGCCGGTCTATAACCTCATGCACCCCGGCTCGTGCTGCCCGCGCTGCGACCAGCGGATTCGCCCCTGG
GAAAACATCCCCGTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCAGCCATTGCCATGCAACCATCAGCGCGCGTTACCC
CCTCACCGAACTGGCATGCGCGCTGATCAGCGCGAATGTCGCTTGGCATTTCGGTTTCAGCTGGCAGGCGGGCGCGGTGC
TGCTGCTGAGTTGGGGGCTGCTGGGCATGAGCCTGATCGATGTGGATCACCAGTTGCTGCCGGATGCATTGGTGCTGCCA
CTGCTATGGCTGGGGCTTATGGTCAACAGCGCGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCGGTGTTTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGTGACTTCAAGC
TACTCGCATTGTTGGGAGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGTTGATGGCGTCACTGCTCGGCGTGTTC
GTCGGCGTGCTGCTGATGCGCTGGCGCAAGACCGGAGCGTCGGTGCCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Vibrio campbellii strain DS40M4	49.821	96.875	0.483
pilD	Acinetobacter baumannii D1279779	45.487	96.181	0.437
pilD	Acinetobacter nosocomialis M2	44.765	96.181	0.431
pilD	Neisseria gonorrhoeae MS11	47.674	89.583	0.427