Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4K01_RS04600 Genome accession   NZ_CP027756
Coordinates   1016209..1017417 (-) Length   402 a.a.
NCBI ID   WP_057021606.1    Uniprot ID   A0AAX3IEF9
Organism   Pseudomonas synxantha strain R6-28-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011209..1022417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K01_RS04565 (C4K01_0914) - 1012500..1012673 (-) 174 WP_046070858.1 DUF3094 family protein -
  C4K01_RS04570 (C4K01_0915) - 1012762..1013391 (-) 630 WP_057021611.1 DUF1780 domain-containing protein -
  C4K01_RS04575 (C4K01_0916) - 1013563..1014252 (+) 690 WP_057021610.1 energy-coupling factor ABC transporter permease -
  C4K01_RS04580 (C4K01_0917) - 1014317..1014532 (+) 216 WP_003171680.1 hypothetical protein -
  C4K01_RS04585 (C4K01_0918) yacG 1014529..1014729 (-) 201 WP_057021609.1 DNA gyrase inhibitor YacG -
  C4K01_RS04590 (C4K01_0919) coaE 1014726..1015349 (-) 624 WP_057021608.1 dephospho-CoA kinase -
  C4K01_RS04595 (C4K01_0920) pilD 1015346..1016212 (-) 867 WP_057021607.1 prepilin peptidase Machinery gene
  C4K01_RS04600 (C4K01_0921) pilC 1016209..1017417 (-) 1209 WP_057021606.1 type II secretion system F family protein Machinery gene
  C4K01_RS04605 (C4K01_0922) - 1017619..1018032 (+) 414 WP_057013848.1 pilin -
  C4K01_RS04615 (C4K01_0924) - 1018320..1018625 (+) 306 WP_057021605.1 DUF6388 family protein -
  C4K01_RS04620 (C4K01_0925) nadC 1018672..1019520 (-) 849 WP_057021604.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4K01_RS04625 (C4K01_0926) - 1019766..1021919 (+) 2154 WP_057021603.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43485.06 Da        Isoelectric Point: 10.2429

>NTDB_id=280165 C4K01_RS04600 WP_057021606.1 1016209..1017417(-) (pilC) [Pseudomonas synxantha strain R6-28-08]
MNDTSTIYAWEGINRKGRRVSGQIAGHDLALIKAQLRRKGICPERVRKKPTSRPIFAPRILPADIALLTRQLATLLKAGI
PLLQAFDIISEGVENRQVCDLVKALKQQIASGNSLADALRQHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQRL
KARIKKAMTYPVTVLVVATLVSVVLLTHVVPQFQKLFTGVGGQLPGFTLAVIALSEFLQQAWWMLALGLGASLAGLRQAY
HAYPGFRHRVQAGLLKMPLAGKLLHNSAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIERMRHDVSTGMQLN
QAMASNGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDTLVDNLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=280165 C4K01_RS04600 WP_057021606.1 1016209..1017417(-) (pilC) [Pseudomonas synxantha strain R6-28-08]
ATGAATGACACTTCAACGATCTACGCCTGGGAAGGCATCAACCGCAAGGGACGCAGGGTGTCCGGGCAAATTGCTGGCCA
TGACCTTGCGCTGATCAAGGCACAACTGCGCCGGAAAGGGATCTGCCCCGAGCGTGTGCGCAAGAAGCCTACATCACGGC
CGATCTTTGCCCCACGAATATTGCCTGCGGATATCGCCCTGCTCACCCGCCAGTTGGCCACATTGCTCAAGGCCGGCATC
CCGCTGCTACAAGCTTTCGATATCATCAGCGAGGGCGTCGAGAACCGGCAGGTGTGTGACCTGGTCAAAGCCTTGAAACA
GCAGATCGCCAGCGGCAACAGCTTGGCCGATGCGCTGCGCCAACACCCGCGTTATTTCGACGATCTGTACTGCAACCTGG
TCGCCGCCGGGGAACAGGCAGGTGCCCTGGAAACCCTACTGGAGCGCGTGGCGATTCATCTGGAAAAAAGCCAACGGCTC
AAAGCCAGGATCAAAAAGGCCATGACCTACCCTGTCACGGTATTGGTGGTCGCCACACTGGTCAGCGTGGTGCTACTGAC
GCACGTCGTGCCGCAATTCCAGAAATTGTTCACCGGCGTCGGCGGCCAGTTGCCCGGGTTTACCTTGGCGGTCATTGCCC
TGTCCGAATTCCTGCAACAGGCGTGGTGGATGCTGGCGCTGGGCTTGGGTGCGTCGCTGGCAGGGCTTCGCCAGGCTTAC
CATGCTTACCCAGGTTTTCGCCATCGGGTGCAAGCGGGTTTGTTGAAAATGCCCCTGGCAGGCAAACTGCTGCACAACTC
TGCCGTCGCTCGTTACGCCCGCACGCTTTCGACCACGTTTGCAGCGGGCGTGCCCCTCGTGCAGGCATTGGGCTCGGTGG
CCGGCGCCGTCGGCAATGGACCATTCAAACAGGCAATTGAACGTATGCGCCACGATGTATCCACAGGCATGCAATTGAAC
CAGGCCATGGCCAGCAATGGCCTGTTTCCAGGCATGGCGATCCAGATGACGGCCATCGGTGAAGAATCCGGCACGCTGGA
CCGAATGTTGGAGAAAGTCGCGAACCACTACGAGGCGGACGTGGACACCTTGGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTACTGGGGGGCATTGTCGGGGCGTTGGTGATCGCCCTCTACCTGCCGGTCTTTCAATTGGGCACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.533

99.005

0.56
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Acinetobacter baumannii D1279779

48.354

98.259

0.475
  pilC Legionella pneumophila strain ERS1305867

47.859

98.756

0.473
  pilG Neisseria gonorrhoeae MS11

40.157

94.776

0.381
  pilC Thermus thermophilus HB27

37.905

99.751

0.378
  pilG Neisseria meningitidis 44/76-A

39.37

94.776

0.373
  pilC Vibrio cholerae strain A1552

38.265

97.512

0.373
  pilC Vibrio campbellii strain DS40M4

37.5

97.512

0.366

Multiple sequence alignment