Detailed information NTG0280164

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K01_RS04595
• Genome accession: NZ_CP027756
• Coordinates: 1015346..1016212 (-)
• Length: 288 a.a.
• NCBI ID: WP_057021607.1
• Uniprot ID: -
• Organism: Pseudomonas synxantha strain R6-28-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1010346..1021212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K01_RS04560 (C4K01_0913)	-	1011141..1012439 (-)	1299	WP_057021612.1	NAD(P)/FAD-dependent oxidoreductase	-
C4K01_RS04565 (C4K01_0914)	-	1012500..1012673 (-)	174	WP_046070858.1	DUF3094 family protein	-
C4K01_RS04570 (C4K01_0915)	-	1012762..1013391 (-)	630	WP_057021611.1	DUF1780 domain-containing protein	-
C4K01_RS04575 (C4K01_0916)	-	1013563..1014252 (+)	690	WP_057021610.1	energy-coupling factor ABC transporter permease	-
C4K01_RS04580 (C4K01_0917)	-	1014317..1014532 (+)	216	WP_003171680.1	hypothetical protein	-
C4K01_RS04585 (C4K01_0918)	yacG	1014529..1014729 (-)	201	WP_057021609.1	DNA gyrase inhibitor YacG	-
C4K01_RS04590 (C4K01_0919)	coaE	1014726..1015349 (-)	624	WP_057021608.1	dephospho-CoA kinase	-
C4K01_RS04595 (C4K01_0920)	pilD	1015346..1016212 (-)	867	WP_057021607.1	prepilin peptidase	Machinery gene
C4K01_RS04600 (C4K01_0921)	pilC	1016209..1017417 (-)	1209	WP_057021606.1	type II secretion system F family protein	Machinery gene
C4K01_RS04605 (C4K01_0922)	-	1017619..1018032 (+)	414	WP_057013848.1	pilin	-
C4K01_RS04615 (C4K01_0924)	-	1018320..1018625 (+)	306	WP_057021605.1	DUF6388 family protein	-
C4K01_RS04620 (C4K01_0925)	nadC	1018672..1019520 (-)	849	WP_057021604.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31836.24 Da
• Isoelectric Point: 8.1654

>NTDB_id=280164 C4K01_RS04595 WP_057021607.1 1015346..1016212(-) (pilD) [Pseudomonas synxantha strain R6-28-08]
MILLLTERPWFFVAMALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILGLPAASAGPAYNLMRPNSCCTRCEQPIRPW
ENIPLLSYLLLRGRCTHCREPISLRYPLTELACALITATVAWHFGFGWQAGAVLLLSWGLLGMSLIDLDHQLLPDALVLP
LLWLGLILNSADLLATLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLI
AGLILLRLRKAPVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=280164 C4K01_RS04595 WP_057021607.1 1015346..1016212(-) (pilD) [Pseudomonas synxantha strain R6-28-08]
TTGATCCTGCTGCTGACCGAACGGCCCTGGTTTTTTGTTGCCATGGCACTGGTGCTGGGCCTGATCGTTGGCAGTTTCCT
CAATGTGCTGGCGTGGCGACTGCCAAAAATGCTCGAGCGCGAATGGCGTGCCCAGGCCCATGAGATCCTCGGCTTGCCTG
CAGCATCCGCCGGGCCGGCCTATAACCTGATGCGCCCGAATTCCTGCTGCACCCGTTGCGAACAGCCAATTCGGCCCTGG
GAAAATATTCCACTGCTCAGCTACCTGTTGCTCAGGGGGCGTTGTACACATTGCCGTGAGCCCATCAGCCTTCGTTATCC
ATTAACCGAGCTGGCCTGCGCGTTGATCACGGCCACTGTTGCCTGGCACTTCGGTTTTGGCTGGCAAGCCGGCGCGGTGT
TGTTGCTGAGCTGGGGCTTGCTGGGCATGAGCCTGATTGATCTAGACCATCAATTGTTACCGGATGCGCTGGTGCTGCCG
CTGCTATGGCTGGGACTCATCCTCAACAGCGCCGACCTGCTGGCGACCTTGCCCGATGCGCTGTGGGGCGCGGTCATTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGTAAAGATGGCATGGGCCATGGCGACTTCAAGT
TATTGGCATTGCTGGGAGCCTGGGGCGGCTGGCAGATACTGCCGATGACATTGCTGATGGCCTCACTGTTGGGCTTGATT
GCCGGGCTGATTCTATTGCGTTTGCGCAAGGCCCCGGTGTCAGCACCGATGCCATTTGGTCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.857	97.222	0.514
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Acinetobacter baumannii D1279779	47.794	94.444	0.451
pilD	Acinetobacter nosocomialis M2	47.794	94.444	0.451
pilD	Neisseria gonorrhoeae MS11	49.231	90.278	0.444